Locus 3146

Sequence ID 3R_DroMel_CAF1
Location 8,337,775 – 8,337,870
Length 95
Max. P 0.996031
window5097

overview

Window 7

Location 8,337,775 – 8,337,870
Length 95
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 78.72
Mean single sequence MFE -25.00
Consensus MFE -16.75
Energy contribution -17.25
Covariance contribution 0.50
Combinations/Pair 1.13
Mean z-score -2.68
Structure conservation index 0.67
SVM decision value 2.64
SVM RNA-class probability 0.996031
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8337775 95 + 27905053
UAUGAUACUUAGAGCUAGAGGUAACAUUAUGGGAUUGCACUUUUUCCAUGAUUUAG---------------------GCUAGUUCUAUCUGUAACAACAUUAAAAAGUGUGUUUAA----
..((.(((.(((((((((...(((.(((((((((.........)))))))))))).---------------------.)))))))))...))).))(((((....)))))......---- ( -24.00)
>DroSec_CAF1 10497 91 + 1
----AUACUUAGAGCUAGAGUUAAGAUUAUGGGAUUGCACUUUUUCCAUGAUUUAG---------------------GCUAGUUCUAUCUGUGACAACAUUAAAAAGUGUGUUUAA----
----(((..(((((((((.....(((((((((((.........)))))))))))..---------------------.)))))))))..)))((((.((((....))))))))...---- ( -24.80)
>DroSim_CAF1 9231 94 + 1
-AUGAUACUUAGAGCUAGAGUUAAGAUUAUGGGAUUGCACUUUUUCCAUGAUUUAC---------------------GCUAGUUCUAUCUGUGACAACAUUAAAAAGUGUGUUUAA----
-.((.(((.(((((((((.((..(((((((((((.........)))))))))))))---------------------.)))))))))...))).))(((((....)))))......---- ( -26.70)
>DroYak_CAF1 9329 116 + 1
----AUACUUAUAGCUAGAGGUAAGAUUAUGCGAUUGCACUUUUUCCAUGAUUUUGGGCUUUUGAACAAGUCAGUUAGUUAGCUUCAAGUAUGACAACAUUAAAAAGUGUUUUUAACUUA
----.(((((..((((((...((((((((((.((..........))))))))))))(((((......)))))......))))))..)))))(((.((((((....)))))).)))..... ( -24.50)
>consensus
____AUACUUAGAGCUAGAGGUAAGAUUAUGGGAUUGCACUUUUUCCAUGAUUUAG_____________________GCUAGUUCUAUCUGUGACAACAUUAAAAAGUGUGUUUAA____
....(((..(((((((((.....(((((((((((.........)))))))))))........................)))))))))..)))((((.((((....))))))))....... (-16.75 = -17.25 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:10 2006