| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,331,514 – 8,331,623 |
| Length | 109 |
| Max. P | 0.866870 |
| Location | 8,331,514 – 8,331,623 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 90.27 |
| Mean single sequence MFE | -22.37 |
| Consensus MFE | -18.63 |
| Energy contribution | -18.63 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.866870 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8331514 109 + 27905053 AUUCAAUUCAAACAAGCAAAGUGAACACGUCGCUAAGCGAAAGCUAAGCAAAUAAACAAGCGCAGCUGAACAAGCUAAACAAUCUGCAGUAAAGU-GCAAGUUAAAGUGA .........................(((...(((.(((....))).))).....(((..((((((((.....))))..((........))...))-))..)))...))). ( -23.50) >DroEre_CAF1 10616 107 + 1 UUUCAAUUCAAAGAAGCAAAGUGAACACAUCGCUGAGCGAAAGCUAAGCAACCAAAUAAGCGCAGCUGAACAAGCUAAACAAACUGCAGUGAAGU-GCAAGU-AAAGUA- ...............((..(((((.....))))).(((....)))..))..........((((((((.....))))......((....))...))-))....-......- ( -21.10) >DroYak_CAF1 6599 110 + 1 AUUCAAUUCAAACAAGCAAACUGAAAACAUCGCUAAGCGAAAGCUAAGCAAACAAACAAGCGCAGCUGAACAAGCUAAACAAUCUGCAGUAACGUUGCAAGUUAAAGUGA ..(((.....(((..((((((((........(((.(((....))).)))..............((((.....))))..........))))....))))..)))....))) ( -22.50) >consensus AUUCAAUUCAAACAAGCAAAGUGAACACAUCGCUAAGCGAAAGCUAAGCAAACAAACAAGCGCAGCUGAACAAGCUAAACAAUCUGCAGUAAAGU_GCAAGUUAAAGUGA ...............(((...((........(((.(((....))).)))..............((((.....))))...))...)))....................... (-18.63 = -18.63 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:09 2006