Locus 3144

Sequence ID 3R_DroMel_CAF1
Location 8,329,026 – 8,329,146
Length 120
Max. P 0.715845
window5095

overview

Window 5

Location 8,329,026 – 8,329,146
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 96.11
Mean single sequence MFE -46.50
Consensus MFE -44.95
Energy contribution -45.07
Covariance contribution 0.11
Combinations/Pair 1.02
Mean z-score -1.67
Structure conservation index 0.97
SVM decision value 0.39
SVM RNA-class probability 0.715845
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8329026 120 + 27905053
AUCUCAAGGAUGAGCGCAAUGUGCUUAUCUUCGACUUGGGCGGCGGCACCUUCGAUGUCUCCAUCCUGACCAUCGACGAGGGAUCUCUGUUCGAGGUGCGCUCCACAGCCGGAGACACAC
...((.(((((((((((...))))))))))).))(((((((((.((..(((((((((((........)).))))))..)))..)).)))))))))(((..((((......)))).))).. ( -47.30)
>DroSec_CAF1 7585 120 + 1
AUCUCAAGGGUGAGCGCAAUGUGCUUAUCUUCGACUUGGGCGGCGGUACCUUCGAUGUCUCCAUCCUGACCAUCGACGAGGGAUCACUGUUCGAGGUGCGCUCCACAGCCGGAGACACAC
...((.(((((((((((...))))))))))).))(((((((((.(((.(((((((((((........)).))))))..))).))).)))))))))(((..((((......)))).))).. ( -47.30)
>DroEre_CAF1 7790 120 + 1
ACCUCAAGGGUGAGCGCAAUGUGCUUAUCUUCGACUUGGGCGGCGGCACCUUCGAUGUCUCCAUCCUGACCAUCGACGAGGGAUCACUGUUCGAAGUGCGCUCCACCGCCGGAGACACGC
...((.(((((((((((...))))))))))).))(((.(((((.((..(((((((((((........)).))))))..)))...((((......))))....)).))))).)))...... ( -44.90)
>consensus
AUCUCAAGGGUGAGCGCAAUGUGCUUAUCUUCGACUUGGGCGGCGGCACCUUCGAUGUCUCCAUCCUGACCAUCGACGAGGGAUCACUGUUCGAGGUGCGCUCCACAGCCGGAGACACAC
...((.(((((((((((...))))))))))).))(((((((((.((..(((((((((((........)).))))))..)))..)).)))))))))(((..((((......)))).))).. (-44.95 = -45.07 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:08 2006