Locus 3139

Sequence ID 3R_DroMel_CAF1
Location 8,287,184 – 8,287,297
Length 113
Max. P 0.596759
window5087

overview

Window 7

Location 8,287,184 – 8,287,297
Length 113
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 82.70
Mean single sequence MFE -20.63
Consensus MFE -16.04
Energy contribution -15.10
Covariance contribution -0.94
Combinations/Pair 1.33
Mean z-score -1.48
Structure conservation index 0.78
SVM decision value 0.13
SVM RNA-class probability 0.596759
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8287184 113 - 27905053
UGUAUUCAUUCGUUUU--UGCCAUUUA----UACUCACUCAAUAGGCUUAUGUACUGGUCCAAGUACUUCAUGAGAUCCAGGUUAUUCGAUUUUCUUUCAAUAGCCUGUUUAAUUUCAA
................--.(((.....----.............)))....(((((......)))))....((((((.(((((((((.((.......)))))))))))....)))))). ( -21.17)
>DroSec_CAF1 4855 115 - 1
UGUAUUCAUCCGUUUUUUUUUCAAUUA----UACUCACUCAAUAGGCUUAUGUACUGGUCCAAGUACUUCAUAAGAUCCAGGUUAUUCGAUUUCCUUUCAAUAGCCUGUUUAAUUUCCA
...........................----.............((((((((((((......)))))...)))))...(((((((((.((.......)))))))))))........)). ( -18.60)
>DroSim_CAF1 5200 111 - 1
--UUUUCAUCCGUUUU--UUUCAGUUA----UACUCACUCAAUAGGCUUAUGUACUGGUCCAAGUACUUCAUAAGAUCCAGGUUAUUCGAUUUCCUUUCAAUAGCCUGUUUAAUUUCCA
--..............--.........----.............((((((((((((......)))))...)))))...(((((((((.((.......)))))))))))........)). ( -18.60)
>DroEre_CAF1 4852 113 - 1
UGUAUUAAUUCGAGUU--UACCAGUUA----UACUCACUUAAUAAGCUUAUGUACUGGUCCAAGUACUUCAUGAGAUCCAGGUUAUUAGAUUUUCUUUCAAUAGCCUGUUUAAUUUCCA
..((((((...((((.--((.....))----.))))..))))))..((((((((((......)))))...)))))...(((((((((.((.......)))))))))))........... ( -21.70)
>DroYak_CAF1 4874 113 - 1
UCUAAUCAUCCGUGUU--UUCCUGUUA----UACUCACUCAACAAGCUUAUGUACUGGUCCAGGUACUUCAUGAGAUCUAGGUUAUUUGAUUUUCUUUCUAUAGCCUGUUUAAUUUCCA
.......(((((((..--..((((...----.((.((....(((......)))..)))).)))).....)))).))).((((((((..((.......)).))))))))........... ( -16.10)
>DroAna_CAF1 4613 112 - 1
---AAUGAAAA--GUG--UUCAAGUUAGGGCCAUUUACUUAUUAGGCUUAUGUACUGAUCCAGGUACUUCAUGAGGUCCAGGUUAUUGGAUUUCUUUUCGAUGGUUUGCUUGAUUUCCA
---........--...--.((((((..((((((((((((((((((((....)).)))))..)))))......(((((((((....))))))))).....))))))))))))))...... ( -27.60)
>consensus
UGUAUUCAUCCGUGUU__UUCCAGUUA____UACUCACUCAAUAGGCUUAUGUACUGGUCCAAGUACUUCAUGAGAUCCAGGUUAUUCGAUUUCCUUUCAAUAGCCUGUUUAAUUUCCA
..............................................((((((((((......)))))...)))))...(((((((((.((.......)))))))))))........... (-16.04 = -15.10 +  -0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:54:00 2006