Locus 3138

Sequence ID 3R_DroMel_CAF1
Location 8,282,661 – 8,282,769
Length 108
Max. P 0.652354
window5086

overview

Window 6

Location 8,282,661 – 8,282,769
Length 108
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 82.14
Mean single sequence MFE -41.02
Consensus MFE -25.42
Energy contribution -27.98
Covariance contribution 2.56
Combinations/Pair 1.19
Mean z-score -2.11
Structure conservation index 0.62
SVM decision value 0.25
SVM RNA-class probability 0.652354
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8282661 108 - 27905053
CUGCUUCUUAGUUGGCGUUGCCUUCGGCGAAUGCUCACUGAUCACCUCGUACUGGUGGUCCAGGUGCUGAGUGCGCACACAACACCAGCUCUUUGAAUUCUGAGAGCA
.........(((.(((((((((...))).)))))).)))(((((((.......)))))))..((((.((.((....)).)).)))).((((((.(....).)))))). ( -37.80)
>DroGri_CAF1 1738 105 - 1
UUGCUUGUUGGUGGCC---AACUUCGGUGACUGCUCACUGAUGACAUCAAACUGAUUGUCCAGAUGCUGGGUGCGCACACACACCCAACUCUUCUGAUUCGGCGAGCA
.((((((((((.....---....(((((((....))))))).((((((.....)).))))((((.(.((((((.(....).)))))).)...))))..)))))))))) ( -35.90)
>DroSim_CAF1 319 108 - 1
UUGCUUCUUAGUGGGCGUUGCCUUCGGCGAGUGCUCACUGAUCACCUCGUAUUGGUGGUCCAGGUGCUGAGUGCGAACACAACACCAGCUCUUUGAAUUCUGAGAGCA
.........(((((((((((((...))))).))))))))(((((((.......)))))))..((((.((.((....)).)).)))).((((((.(....).)))))). ( -43.00)
>DroEre_CAF1 311 108 - 1
CUGCUUCUUAGUGGGCGUGGCCUUCGGCGAGUGCUCGCUGAUCACCUCGUACUGGUGGUCCAGGUGCUGAGUGCGCACACAGCACCAGCUCUUUGAAUUCUGAGAGCA
.........(((((((((.(((...))).).))))))))(((((((.......)))))))..(((((((.((....)).))))))).((((((.(....).)))))). ( -47.30)
>DroYak_CAF1 312 108 - 1
CUGCUUCUUAGUGGGCGUGGCCUUCGGCGAAUGCUCGCUGAUCACCUCGAACUGGUGGUCCAGGUGCUGAGUGCGCACACAGCACCAGCUCUUGGAAUUCUGAGAGCA
.........(((((((((.(((...)))..)))))))))(((((((.......)))))))..(((((((.((....)).))))))).(((((..(....)..))))). ( -51.80)
>DroAna_CAF1 323 97 - 1
--GCUUAUU---------GGCCUUCGGCGACUGCUCACUUAUGACCUCGAACUGGUGGUCCAGGUGCUGGGUUCGAACGCACAGCCAGCUCCUCGGAUUCUGGGAGCA
--(((....---------)))....(((...(((........(((((.(..((((....))))...).))))).....)))..))).(((((.(((...)))))))). ( -30.32)
>consensus
CUGCUUCUUAGUGGGCGUGGCCUUCGGCGAAUGCUCACUGAUCACCUCGAACUGGUGGUCCAGGUGCUGAGUGCGCACACAACACCAGCUCUUUGAAUUCUGAGAGCA
.........((((((((..(((...)))...))))))))(((((((.......)))))))..((((.((.((....)).)).)))).((((((........)))))). (-25.42 = -27.98 +   2.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:59 2006