| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,251,476 – 8,251,581 |
| Length | 105 |
| Max. P | 0.579601 |
| Location | 8,251,476 – 8,251,581 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 81.89 |
| Mean single sequence MFE | -27.97 |
| Consensus MFE | -15.78 |
| Energy contribution | -15.08 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.20 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.579601 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8251476 105 - 27905053 CAG---CAUA--CGAAGAAAUUUUCAUACUUGUUAGCUGUGAAAAGUAUUUAGCAGAAAUAGAUUUCGGAAAUUAA--AGAUUUCGAGG-CUAUUUCGGCGCUACCAACGAUC .((---(...--.(((....((((((((((....)).))))))))...))).((.(((((((.((((((((.....--...))))))))-))))))).))))).......... ( -26.10) >DroPse_CAF1 7863 109 - 1 UGUGGACACAC-UGGAGAAAUUUUCAUGCUAGUUAGCUGUGAAAAGUAUUUUGCGGAAAUAGAUUUGAAAAAUUCA--AUAUUUCGAAG-CUAUUUCGGCGCUACUAUCCAUC .(((....)))-((((.....(((((((((....))).))))))((((...(((.(((((((.(((((((......--...))))))).-))))))).))).)))).)))).. ( -30.00) >DroEre_CAF1 7815 108 - 1 CAC---CGUA--CGAAGGAAUUUUCAUACCAGUUAGCUGUGAAAAGUAUUUAGCAGAAAUAGAUUUGGGAAACUAGAGAGAUUUCGAGGGUUAUUUCGGCGCUACCAACCAUC ...---(((.--(((((.(((((((..........((((...........)))).(((((...(((((....)))))...)))))))))))).))))))))............ ( -25.30) >DroYak_CAF1 7940 107 - 1 CAU---CGUA--CGAAGGAAUUUUCAUACCAGUUAGCUGUGAAAAGUAUUUAGCAGAAAUAGAUUUGGGAAACUAGAGAGAUUUCGAGG-CUAUUUCGGCGCUACCAACCAUC ...---(((.--(((((...((((((((.(.....).)))))))).....((((.(((((...(((((....)))))...)))))...)-)))))))))))............ ( -25.90) >DroAna_CAF1 7456 110 - 1 UGUGGACACACUGGAGAAAUUUUUCAUACUAGUUAGCUGUGAAAAGUAUUUUGCAGAAAUAGAAUUGAAAAACUAA--ACAUUUCGAGG-CUAUUUCGGCGAAAGCAACCAUC .(((....)))(((....((((((((((((....)).)))))))))).((((((.(((((((..((((((......--...))))))..-))))))).))))))....))).. ( -30.50) >DroPer_CAF1 7854 109 - 1 UGUGGACACAC-UGGAGAAAUUUUCAUGCUAGUUAGCUGUGAAAAGUAUUUUGCGGAAAUAGAUUUGAAAAAUUCA--AUAUUUCGAAG-CUAUUUCGGCGCUACUAUCCAUC .(((....)))-((((.....(((((((((....))).))))))((((...(((.(((((((.(((((((......--...))))))).-))))))).))).)))).)))).. ( -30.00) >consensus CAU___CACA__CGAAGAAAUUUUCAUACUAGUUAGCUGUGAAAAGUAUUUAGCAGAAAUAGAUUUGAAAAACUAA__AGAUUUCGAGG_CUAUUUCGGCGCUACCAACCAUC ....................(((((((((......).)))))))).......((.(((((((..((((((...........))))))...))))))).))............. (-15.78 = -15.08 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:48 2006