Locus 3130

Sequence ID 3R_DroMel_CAF1
Location 8,243,284 – 8,243,382
Length 98
Max. P 0.914228
window5071

overview

Window 1

Location 8,243,284 – 8,243,382
Length 98
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 79.66
Mean single sequence MFE -38.03
Consensus MFE -30.47
Energy contribution -29.95
Covariance contribution -0.52
Combinations/Pair 1.48
Mean z-score -1.88
Structure conservation index 0.80
SVM decision value 1.09
SVM RNA-class probability 0.914228
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8243284 98 - 27905053
ACCGGUUGGGAACUUUUUGGCCGGCUUUGCCAUUGGAAUACGCAUGGGGGAACUGGCUACAGUUAAGACCACCGGUAGUGUUCUUCUGGGAGCCGAAG
...(((..(((...)))..)))(((((..(((..(((((((...(((((.(((((....)))))....)).)))...)))))))..)))))))).... ( -38.20)
>DroSec_CAF1 900 98 - 1
ACCGGUUGGGAACUUCUUGACCGGCUUUAUUACUGGAAUACGCAUGGGGGAACUGGCUACAGUUACGCCCACCGGCAGUGAUCUUCUGGGAGCCGAAG
...(((..((.....))..)))((((((......(((.(((((.((((.((((((....))))).).))))...)).))).)))....)))))).... ( -37.30)
>DroSim_CAF1 809 98 - 1
ACCGGUUGGGAACUUCUUGACCGGCUUUACCAUUGGCAUACGCAUGGGGGAACUGGCUACAGUUACGCCCACCGGCAGUGUUCUUCUGGGAGCCGAAG
...(((..((.....))..)))(((((..(((..((.((((((.((((.((((((....))))).).))))...)).)))).))..)))))))).... ( -40.00)
>DroEre_CAF1 874 98 - 1
ACCAGUUGGGAAUUUCUUGGCCGGCUUCACCAUUGGGAUACGCAUGGGGGAACUGGCCACAGUUACACCCACCGGCAGUGUUCUUCUGGGAGUCGAAG
....((..((.....))..))(((((.(.(((..(((((((((.((((..(((((....)))))...))))...)).)))))))..)))))))))... ( -38.00)
>DroYak_CAF1 899 98 - 1
UCCGGCUGGGAAUUUCUUGGCCGGCUUCACCAUUGGGAUGCGCAUGGGGGAACUGGACACAGUUACACCCAUCGGCAGUGUUCUUCUGGGGGUCGAAG
.(((((..((.....))..)))))(((((((...((((((((((((((..(((((....)))))...)))))..)).)))))))......))).)))) ( -41.90)
>DroAna_CAF1 861 98 - 1
AUUUGCAGGCCGCUUGUUCGAGGGCUUCAUAAGGGGACUUCGCAGAGGGGAUCUUGCUACAGUUACGCCCACUGGCAACACUCUCUUUUGCGCAGCAG
...((((((((.(((....))))))))...(((....)))(((((((((((..((((..((((.......))))))))...)))))))))))..))). ( -32.80)
>consensus
ACCGGUUGGGAACUUCUUGGCCGGCUUCACCAUUGGAAUACGCAUGGGGGAACUGGCUACAGUUACGCCCACCGGCAGUGUUCUUCUGGGAGCCGAAG
...(((..((.....))..)))(((((..(((..(((((((((.(((((((((((....)))))...))).))))).)))))))..)))))))).... (-30.47 = -29.95 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:45 2006