| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,222,897 – 8,223,003 |
| Length | 106 |
| Max. P | 0.806886 |
| Location | 8,222,897 – 8,223,003 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 81.07 |
| Mean single sequence MFE | -29.72 |
| Consensus MFE | -25.12 |
| Energy contribution | -24.77 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.806886 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8222897 106 - 27905053 -UUA-A---UAAUCCUUGAAGAUCCUUAAGGUCGAGAUUUUCGAUAGGAAAAGCACUCAGUAUUUCGUGCGUCUGGUGCUCGAUGCUAUGAAAUACCGACAGGAGCACAAU -...-.---...(((((((((((((........).))))))))..))))...((.(((.((((((((((((((........))))).))))))))).))...).))..... ( -27.50) >DroPse_CAF1 46625 111 - 1 CUAAUACCCAUCUCUUUGCAGUAUAUCAAGGUCGAUCUCUUUGACAAGAAGAGCACUGAGUAUUUUGUGCGCUUGGUUCUUGAUGCAAUGAAAUACCGUCAGGAGCACAAC ...((((.((......))..)))).((((((.......))))))((((....((((..........)))).))))((((((((((...........))))))))))..... ( -25.00) >DroSec_CAF1 35978 107 - 1 -UUAUC---UUAUCCUUGCAGAUACUUAAAGUCGAGCUUUUCGAUAGGAAAAGCACUCAGUAUUUCGUGCGUCUGGUGCUCGAUGCCAUGAAGUACCGACAGGAGCACAAU -.((((---(((....)).)))))(((...((((.(((((((.....))))))).....((((((((((((((........)))).))))))))))))))..)))...... ( -31.10) >DroEre_CAF1 15498 106 - 1 -UUA-A---UUUUCCACGUAGAUCCUUAAGGUCGAGCUUUUCGAUAAGAAAAGCACUCAGUAUUUCGUGCGUCUGGUGCUCGAUGCCAUGAAGUACCGACAGGAGCACAAU -...-.---........((...((((....((((.(((((((.....))))))).....((((((((((((((........)))).))))))))))))))))))..))... ( -33.50) >DroYak_CAF1 16073 106 - 1 -UUU-C---UUUUCCAUGUAGAUCCUUAAGGUCGAGCUUUUCGAUAAGAAAAGCACUCAGUAUUUCGUGCGUCUGGUGCUCGAUGCCAUGAAGUACCGACAGGAGCACAAU -...-.---.......(((...((((....((((.(((((((.....))))))).....((((((((((((((........)))).))))))))))))))))))..))).. ( -34.20) >DroPer_CAF1 51613 111 - 1 CUAAUACCCAUCUCUUUGCAGUAUAUCAAGGUCGAUCUCUUUGACAAGAAGAGCACCGAGUACUUUGUGCGUUUGGUUCUUGAUGCAAUGAAGUACCGUCAGGAGCACAAC ...........(((((.((..........(((....((((((.....)))))).)))(.((((((..((((((........))))).)..))))))))).)))))...... ( -27.00) >consensus _UUA_A___UUAUCCUUGCAGAUCCUUAAGGUCGAGCUUUUCGAUAAGAAAAGCACUCAGUAUUUCGUGCGUCUGGUGCUCGAUGCCAUGAAGUACCGACAGGAGCACAAU ........................(((...((((.(((((((.....))))))).....((((((((((((((........))))).)))))))))))))..)))...... (-25.12 = -24.77 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:38 2006