| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,221,386 – 8,221,496 |
| Length | 110 |
| Max. P | 0.700127 |
| Location | 8,221,386 – 8,221,496 |
|---|---|
| Length | 110 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 94.58 |
| Mean single sequence MFE | -23.03 |
| Consensus MFE | -20.85 |
| Energy contribution | -20.97 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.700127 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8221386 110 + 27905053 AUUCUUU-UAAAAUUUUCACUCACAAAUUGGGUGGAUCUGCACUCACCUGAUCCUUUUUCCAGGACUCAAAUCGUGCUUCCAUUUUCUCACCCCGCUUGGUUCUAACCAGG .......-.....................(((((((...((((.....(((((((......)))).)))....))))........)).)))))..((((((....)))))) ( -22.80) >DroSec_CAF1 34115 110 + 1 AUUUAUU-UAACAUUUUCAGUCACAAAUUGGGUGGGUCUGCACUCACCUGAUCCUUUUUCCAGGACUCAAAUCGUGCUUCCAUUUUCUCACCCCGCUUGGUUCUGACCAGG .......-........((((...(((...(((((((...((((.....(((((((......)))).)))....)))).........)))))))...)))...))))..... ( -25.50) >DroSim_CAF1 13595 111 + 1 AUUUUUUCUAACAUUUUCACUGACAAAUUGGUUGGAUCUGCACUCACCUGAUCCUUUUUCCAGGACUCAAAUCGUGCUUCCAUUUUCUCACCCCGCUUGGUUCUGACCAGG ...........................(((((..((...((((.....(((((((......)))).)))....))))............(((......)))))..))))). ( -20.80) >consensus AUUUUUU_UAACAUUUUCACUCACAAAUUGGGUGGAUCUGCACUCACCUGAUCCUUUUUCCAGGACUCAAAUCGUGCUUCCAUUUUCUCACCCCGCUUGGUUCUGACCAGG .............................(((((((...((((.....(((((((......)))).)))....)))).)))).........))).((((((....)))))) (-20.85 = -20.97 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:37 2006