| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,217,315 – 8,217,414 |
| Length | 99 |
| Max. P | 0.531498 |
| Location | 8,217,315 – 8,217,414 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 77.99 |
| Mean single sequence MFE | -36.08 |
| Consensus MFE | -18.26 |
| Energy contribution | -18.68 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.51 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.531498 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8217315 99 - 27905053 ACUGCUUAAUCUUAAGGCCCAGGCUGGAAUUGUACCCGUGGAUUACUGCGUCAAUAUGGUGCUGACCUGCGCUUGGAACACGGCCCGGGAUACAAGUAU (((.((((....)))).(((.(((((....(((.((((..(....)..)).......(((((......))))).)).)))))))).))).....))).. ( -26.20) >DroSim_CAF1 9734 99 - 1 ACUGCUUAAUCUCAAGGCCCAGGCUGGAAUUGUACCCGUGGACUACUGCGUCAAUAUGGUGCUGACCUGCGCUUGGAACACGGCCCGGGAUACUAGCAU ..((((..(((((..(((((((((.((....(((((....(((......))).....)))))...))...)))))......)))).)))))...)))). ( -30.50) >DroEre_CAF1 9887 99 - 1 ACUGCUUAAUCUUAAGGCCCAGGCUGGCAUUGUACCCGUGGAUUACUGCGUCAAUAUGGUGCUGGCCUGCGCUUGGAACACGGCCCGGGAUAGUAGCAU .(((((..(((((.((((.(((((..((((..((..((..(....)..))....))..))))..))))).))))((........))))))))))))... ( -38.20) >DroWil_CAF1 94229 95 - 1 CUGGGCUAACUAUCAGGCACAGGCUGGCAUCGUGCCCGUAGACUAUUGCGCCAACAUGGCCUUGGUCUGUGCCUGGAAAACAGCACAAGAGACGA---- ((..(((.....((((((((((((((((...((...(((((....)))))...))...)))..))))))))))))).....)))...))......---- ( -34.80) >DroYak_CAF1 10198 99 - 1 UCUGCUUAAUCUCAAGGCGCAGGCUGGCAUUGUACCCGUAGAUUACUGCGUCAAUAUGGUGCUGGCCUGCGCUUGGAACACGGCCCGGGAUAGUAGCAU ..((((..(((((.((((((((((..((((..((..(((((....)))))....))..))))..))))))))))((........)))))))...)))). ( -48.20) >DroAna_CAF1 67788 95 - 1 GAGGCUCAACGUUAAGGCCCAGGCUGGGAUUGUGCCAGUGGACUACUGUGUGAACAUGGUCCUUACUUGCGCCUGGCAUACGGCCUUGGAGAGUC---- ..(((((....((((((((...((..((....(((.(((((((((.(((....)))))))))..))).)))))..))....)))))))).)))))---- ( -38.60) >consensus ACUGCUUAAUCUUAAGGCCCAGGCUGGCAUUGUACCCGUGGACUACUGCGUCAAUAUGGUGCUGACCUGCGCUUGGAACACGGCCCGGGAUACUAGCAU .................(((.(((((....(((.(((((((....))))).......(((((......))))).)).)))))))).))).......... (-18.26 = -18.68 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:36 2006