| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,206,482 – 8,206,574 |
| Length | 92 |
| Max. P | 0.997820 |
| Location | 8,206,482 – 8,206,574 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 74.70 |
| Mean single sequence MFE | -18.43 |
| Consensus MFE | -11.25 |
| Energy contribution | -11.03 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.52 |
| Structure conservation index | 0.61 |
| SVM decision value | 2.94 |
| SVM RNA-class probability | 0.997820 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8206482 92 + 27905053 -AAACAAAUAAAUCGCAUUGUUAUGAGCACCGUGAUAAUAAAUUAUUA------------------------UCUCAAACAAACAAAGCUUUCAUUUCUU-GUUGAAAAGCUGCUCCA -.(((((..........)))))..((((...(.(((((((...)))))------------------------)).)..........((((((((......-..)).)))))))))).. ( -16.50) >DroSim_CAF1 22152 93 + 1 -AAACAAAUAAAUCGCAUUGUUAUGAGCACAGUGAUAAUAAAUUAUUA------------------------UCUCAAGAAAGCAAAGCUUUCAUUUCUUUCUUGAAAAGCUGCUCCA -.(((((..........)))))..((((((...(((((((...)))))------------------------))(((((((((.(((.......))))))))))))...).))))).. ( -19.80) >DroYak_CAF1 28053 114 + 1 AAAACAAAAAAAAUACAUUGUUAUGAGCACCGUGAUAAUAAAUUAUUAAAAUGGAACCCUCUUGUUGAACAAUCAAAAGAAAUCAAAGCUUUUAUUU----GUUGAAAAGCUGCUCCA ..(((((..........)))))..((((.((((..(((((...)))))..)))).....((((.((((....))))))))......(((((((....----....))))))))))).. ( -19.00) >consensus _AAACAAAUAAAUCGCAUUGUUAUGAGCACCGUGAUAAUAAAUUAUUA________________________UCUCAAGAAAACAAAGCUUUCAUUUCUU_GUUGAAAAGCUGCUCCA ..(((((..........)))))..((((....((((((....))))))......................................((((((((.........)).)))))))))).. (-11.25 = -11.03 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:32 2006