Locus 3114

Sequence ID 3R_DroMel_CAF1
Location 8,204,792 – 8,204,912
Length 120
Max. P 0.621193
window5052

overview

Window 2

Location 8,204,792 – 8,204,912
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.61
Mean single sequence MFE -36.26
Consensus MFE -23.70
Energy contribution -25.07
Covariance contribution 1.37
Combinations/Pair 1.09
Mean z-score -2.24
Structure conservation index 0.65
SVM decision value 0.18
SVM RNA-class probability 0.621193
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8204792 120 - 27905053
UUGAAGGUCCUGCAGGAACUUCUUUCCCUGCUGCAGACUCUCAAGAUUUUGCUCCCAUCCAGGAGUUACUUUUGGGGCAUUCUUAAGCCACCUCUCCACGUUGGGGAACUUGCUUAGGUC
((((..(((..(((((..........)))))....)))..)))).....(((.((((...((......))..)))))))..(((((((....(((((.....)))))....))))))).. ( -38.40)
>DroSim_CAF1 20468 120 - 1
UUGAAUGCCCUCCAGGAACUUCUUUCCCUGCUGCAGACUCUCAACAUUUUGCUCCCAUCCAGGAGUUACCUUCGGGGCAUUCUUAAGCCACCUCUCCACGUUGGGGAACUUGCUUAGGUC
..(((((((((..((((((((((.........(((((..........)))))........))))))).)))..)))))))))((((((....(((((.....)))))....))))))... ( -39.83)
>DroEre_CAF1 17310 120 - 1
CUUAAUGUCCUCCAGGAACUUCUUCCCCUGCUGCAGACUCUCAAUGUUUUGCUCCCAUCCAGGAGUAACCUUCUGGGCAUUGUUGAACCACCUCUCCACGUUCGGGAACUUGCUGAGGUC
..((((((((...(((...........(((...)))............(((((((......))))))))))...)))))))).......(((((..((.(((....))).))..))))). ( -30.30)
>DroYak_CAF1 26330 120 - 1
CUUCAUGUCGUCCAGGAACUUCUUGGCCUGCUUCAGAGUCUCAAUGUUUUGCUCCCAUCCAGGAGUAACCUUCUGGGCAUUGUUAAACCACCUCUCCACGUUCGGGAACUUGGUGAGGUC
.........((((((((.......((((((...))).)))........(((((((......)))))))..))))))))...........(((((.(((.(((....))).))).))))). ( -36.50)
>consensus
CUGAAUGUCCUCCAGGAACUUCUUUCCCUGCUGCAGACUCUCAAUAUUUUGCUCCCAUCCAGGAGUAACCUUCGGGGCAUUCUUAAACCACCUCUCCACGUUCGGGAACUUGCUGAGGUC
..(((((((((..(((...........(((...)))............(((((((......))))))))))..))))))))).......(((((..((.(((....))).))..))))). (-23.70 = -25.07 +   1.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:26 2006