Locus 3111

Sequence ID 3R_DroMel_CAF1
Location 8,201,881 – 8,202,001
Length 120
Max. P 0.565996
window5048

overview

Window 8

Location 8,201,881 – 8,202,001
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.17
Mean single sequence MFE -38.28
Consensus MFE -31.59
Energy contribution -32.78
Covariance contribution 1.19
Combinations/Pair 1.05
Mean z-score -1.67
Structure conservation index 0.83
SVM decision value 0.06
SVM RNA-class probability 0.565996
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8201881 120 - 27905053
GUCGAAAUCAAAGAUUUCGAAAGUGGAAACGGUGGAGAGGAUGGCAAUAUCAGCCACUGUGAGGUGGUCACCGGCCACGUAGUUCUGGCCCUCCAGGAAGAUAUUCAGAUACUCGAAGGA
.((((((((...))))))))..((((...(((((.....((((....)))).((((((....))))))))))).))))((..((((((....))))))..))..........((....)) ( -39.00)
>DroSim_CAF1 17211 120 - 1
GUCGAAAUCAAAGAUAUCGAAAGUUGAAACGCUGGAGAGGAUGGCAAUAUCGGCCACGGUGAGGUGGUCACCGGCCACGUAGUUCUGGCCCUCCAGGAAGAUAUUCAGAUACUCGAAGGA
.((((.(((...((((((....((....)).((((((..((((....))))(((((..(..(.(((((.....))))).)..)..)))))))))))...))))))..)))..)))).... ( -38.20)
>DroEre_CAF1 16102 120 - 1
GUCGAAAUCAAAGAUAUCGAAAGUGGAAACGCUCGAGAGGAUGGCAAUAUCGGCCACUGUGAGGUGGUCACCGGCCACGUAGUCCUGGCCCUCCAGGAAGAUAUUCAGAUACUCGAAGGA
.((((.(((...))).))))..(((....)))(((((....((((......(((((((....)))))))....)))).((..((((((....))))))..)).........))))).... ( -40.70)
>DroYak_CAF1 23309 120 - 1
AUCGAAAUCAAAGGCGUCGAAAGUGGAAACGCUGGAGAGGAUGGCAAUAUCGGCCACUGUAAGGUGAUCACCGGCCACGUAGUCUUGGCCCUCCAGGAAGAUAUUCAGAUACUCGAAGGA
.((((.(((...(.((((...((((....))))......)))).)((((((..((.......(((....)))(((((.(....).))))).....))..))))))..)))..)))).... ( -35.20)
>consensus
GUCGAAAUCAAAGAUAUCGAAAGUGGAAACGCUGGAGAGGAUGGCAAUAUCGGCCACUGUGAGGUGGUCACCGGCCACGUAGUCCUGGCCCUCCAGGAAGAUAUUCAGAUACUCGAAGGA
.((((.(((...((((((....((....)).((((((..((((....))))(((((..(..(.(((((.....))))).)..)..)))))))))))...))))))..)))..)))).... (-31.59 = -32.78 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:22 2006