Locus 3108

Sequence ID 3R_DroMel_CAF1
Location 8,198,183 – 8,198,303
Length 120
Max. P 0.816234
window5043

overview

Window 3

Location 8,198,183 – 8,198,303
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.17
Mean single sequence MFE -40.92
Consensus MFE -37.47
Energy contribution -37.85
Covariance contribution 0.38
Combinations/Pair 1.08
Mean z-score -1.69
Structure conservation index 0.92
SVM decision value 0.67
SVM RNA-class probability 0.816234
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8198183 120 - 27905053
UCAUCCCAUCCUGGAGUCACCUUCUUGGCAUUGUCGUACCACCUGGAGACAUUGGAGUACUUGCUGAAGUCGAACUCACUAACUUCGAACGUGGAGACAGUGGACAGGAUGGCAAUGUCC
.(((.((((((((......((.....))(((((((...((((.((....))(((((((....(.(((........))))..)))))))..)))).)))))))..))))))))..)))... ( -37.20)
>DroSim_CAF1 13875 120 - 1
UCAUCCCAUCCUGGAGUCACCUUCUUGGCAUUUUCGUACCACCUGGAGACAUUGGAGUACUUGCUGAAGUCGAACUCACUGACUUCGAACGUGGAGACAGUGGACAGGAUGGCAAUGUCC
.(((.((((((((...((((..((((.((......(((((...((....))...).))))....((((((((.......))))))))...)).))))..)))).))))))))..)))... ( -41.20)
>DroEre_CAF1 13549 120 - 1
UCCUCCCAUCCUGGAGUCACCUUUUUGGCAUUGUCGUACCACCUGGACACAUUCGAGUACUUGCUGAAGUCGAAGCCACUCACUUCGAACGUGGAGACAGUGGCCAGGAUGGCAAUGUCC
.....(((((((((.....((.....))(((((((...((((.........(((.(((....)))))).((((((.......))))))..)))).))))))).)))))))))........ ( -40.10)
>DroYak_CAF1 13611 120 - 1
UCGUCCCAUCCUGGAGUCACCUUCUUGGCAUUGUCGUACCACCUGGUGACAUUUGAGUACUUGCUGAAGUCGAAGCCGCUGACUUCGAACGUGGAGACAGUGGCCAGGAUGGCAAUGUCC
.....((((((((...((..((((..((((.....((((((..((....))..)).)))).))))))))..)).(((((((.(((((....))))).)))))))))))))))........ ( -45.20)
>consensus
UCAUCCCAUCCUGGAGUCACCUUCUUGGCAUUGUCGUACCACCUGGAGACAUUGGAGUACUUGCUGAAGUCGAACCCACUGACUUCGAACGUGGAGACAGUGGACAGGAUGGCAAUGUCC
.....((((((((...((..((((..((((.....(((((...((....))...).)))).))))))))..)).(((((((.(((((....))))).)))))))))))))))........ (-37.47 = -37.85 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:17 2006