| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,195,304 – 8,195,417 |
| Length | 113 |
| Max. P | 0.671987 |
| Location | 8,195,304 – 8,195,417 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 83.67 |
| Mean single sequence MFE | -16.30 |
| Consensus MFE | -13.57 |
| Energy contribution | -13.13 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.671987 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8195304 113 + 27905053 GCACUCUAUCCGUUCCCUCAUACACCUCCACCAU-ACCCCCGCAAAAGAAAGCUGCAACUUUCUAAUGAUCCUCCAUUGGAACGAAGCCUU---UUACUCGCUUAAGAACA-AAUUUU ....(((...((((((..................-...........((((((......))))))((((......))))))))))((((...---......)))).)))...-...... ( -16.30) >DroSim_CAF1 9562 116 + 1 GCACUCCACCCGUUCUCUCAAACAUAUCCACCAU-ACCCCCGCAAAAGAAAGCUGCAACUUUCUAAUGAUCCUCCAUUGGAACGAAGCCUUUUUUUACUCGCUUAAGAACA-AAUUUU ...........(((((........(((.....))-).....((.((((((((..((..(.((((((((......)))))))).)..))))))))))....))...))))).-...... ( -16.20) >DroYak_CAF1 9352 110 + 1 GCAUACCACCCGUUCU-CCAUCCAGCACCUCCAUC-CC--CCCUGAAGAAAGCUGAAACUUUCUAAUGAUCCUCCAUUGGAACGAAGUCUU---UU-CCCGCUUAAGAACACAAUUUU ...........(((((-.....((((..((.((..-..--...)).))...))))...(.((((((((......)))))))).)((((...---..-...)))).)))))........ ( -16.40) >consensus GCACUCCACCCGUUCUCUCAUACACCUCCACCAU_ACCCCCGCAAAAGAAAGCUGCAACUUUCUAAUGAUCCUCCAUUGGAACGAAGCCUU___UUACUCGCUUAAGAACA_AAUUUU ..........((((((..............................((((((......))))))((((......))))))))))((((............)))).............. (-13.57 = -13.13 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:13 2006