Locus 3105

Sequence ID 3R_DroMel_CAF1
Location 8,195,152 – 8,195,270
Length 118
Max. P 0.792727
window5038

overview

Window 8

Location 8,195,152 – 8,195,270
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 91.71
Mean single sequence MFE -30.04
Consensus MFE -23.35
Energy contribution -23.85
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.10
Structure conservation index 0.78
SVM decision value 0.59
SVM RNA-class probability 0.792727
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8195152 118 - 27905053
AUCGUCUCCACACACCCAUGGCCACACAACAGUGUAUUAAUCACGCCGCUAACGUCACAUUUUUGCCCGCCAUUAGUGGGUAUGUGUG--GGCAAGUCAGAAUAUAAUAGAAGACAAAAA
...((((...........((((.((((....)))).........(((((....))(((((...(((((((.....))))))).)))))--)))..))))............))))..... ( -31.80)
>DroSim_CAF1 9404 118 - 1
AUCGUCUCCACACACCCAUGGCCACACAACAGUGUAUUAAUCACGCCGCUAACGUCACAUUUUUGCCCGCCAUUAGUGGGUAUGUGUA--GGCAAGUCAGAAAAUAAUAAAAGACAAAAA
...((((...........((((.((((....)))).........(((((....)).((((...(((((((.....))))))).)))).--)))..))))............))))..... ( -29.00)
>DroEre_CAF1 10659 116 - 1
UACGGCUCCCCACACCCAUGGCCACACAACGGUGUAUUAAUCACGCUGCUAACGUCACAUUUUUGCCCGCCAUUAGUGGGUAUGUGUA--GGCAAGUCAGAAAAAAAUAAAAGACAAA--
...((((.....((....))((((((((.((((((.......))))))...............(((((((.....)))))))))))).--))).))))....................-- ( -27.70)
>DroYak_CAF1 9204 118 - 1
CACGGCUCCACACACCCAUGGCCACACAGCAGUGUAUUAAUCACUCUGCUAACGUCACAUUUUUGCCCGCCAUUAGUGGGUAUGUGUAGAGGCAAGUCAGUAAAAAAUAAAAGACAAA--
...(.(((.(((((....((((.....(((((.((.......)).)))))...))))......(((((((.....)))))))))))).))).)..(((..............)))...-- ( -31.64)
>consensus
AACGGCUCCACACACCCAUGGCCACACAACAGUGUAUUAAUCACGCCGCUAACGUCACAUUUUUGCCCGCCAUUAGUGGGUAUGUGUA__GGCAAGUCAGAAAAAAAUAAAAGACAAA__
...((((...........((((.((((....))))............(((.....(((((....((((((.....)))))))))))....)))..))))............))))..... (-23.35 = -23.85 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:12 2006