| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,194,998 – 8,195,112 |
| Length | 114 |
| Max. P | 0.859866 |
| Location | 8,194,998 – 8,195,112 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 76.45 |
| Mean single sequence MFE | -33.43 |
| Consensus MFE | -23.02 |
| Energy contribution | -23.80 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859866 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8194998 114 - 27905053 UCUCUCUGUACCUCUCUCCCCACCUUGCCACGCCCCGCGGGGCGCUUCAAGCUACAACUCUUGUUUGCCGGCAUUGUGGCGACCACAGCCGG-CCCCUAUAAAAGUGGGCUCGCU ................((.((((..((((..((((....))))((..((((........))))...)).))))..)))).))....(((.((-(((((.....)).))))).))) ( -40.50) >DroSim_CAF1 9252 114 - 1 -CUCUCUGUUCCUCUCUCCCCACCCUGCCACGCCCCUCGGGGCGCUUCAAGCUACAACUCUUGUUUGCCGGCAUUGUGGCGACCACAGCCGGACUCCUAUAAAAGUGGGUUCGCU -...............((.((((..((((..((((....))))((..((((........))))...)).))))..)))).))....(((.((((((((.....)).))))))))) ( -35.90) >DroYak_CAF1 9077 90 - 1 UCUAUCUAU-----------------------CCCUC-GGCGCGCUUCAAGCAACAACUCAUGUUUGCCGGCUCUGUGGCGACCGCAGCCGA-CCCCUAUAAAAGUGGGCUCGCU .........-----------------------....(-(((.(((((((((((........)))))).(((((..((((...))))))))).-.........))))).)).)).. ( -23.90) >consensus UCUCUCUGU_CCUCUCUCCCCACC_UGCCACGCCCCCCGGGGCGCUUCAAGCUACAACUCUUGUUUGCCGGCAUUGUGGCGACCACAGCCGG_CCCCUAUAAAAGUGGGCUCGCU ...............................((((....))))((..(((((..........)))))(((((..(((((...))))))))))...(((((....)))))...)). (-23.02 = -23.80 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:11 2006