Locus 3103

Sequence ID 3R_DroMel_CAF1
Location 8,194,007 – 8,194,127
Length 120
Max. P 0.792404
window5036

overview

Window 6

Location 8,194,007 – 8,194,127
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 97.22
Mean single sequence MFE -51.88
Consensus MFE -46.97
Energy contribution -48.47
Covariance contribution 1.50
Combinations/Pair 1.00
Mean z-score -2.01
Structure conservation index 0.91
SVM decision value 0.59
SVM RNA-class probability 0.792404
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8194007 120 + 27905053
GAUUGAUCACGGCGCGCUUCUUGGGGCACUUAGGGUACAGGGAGUCGGUCUUGCCGUACUUCUCCACCAAAUACACCUGGAUGGCGCGGGACUCCCACAGCGCGAAUCCGUUGUCCACCA
....(((.(((((((((((((((((...)))))))....(((((((((.....))...((.(.((((((........))).))).).)))))))))..))))))...)))).)))..... ( -42.50)
>DroSim_CAF1 8275 120 + 1
GGUUGAUCACGGCGCGCUUCUUGGGGCACUUGGGGUACAGCGAGUCGGUCUUGCCGUACUUCUCCACCAGGUACACCUGGAUGGCGCGGGACUCCCACAGCGCGAAUCCGUUGUCCACCA
(((.(((.((((((((((...(((((..((.(((((((.(((((.....))))).))))))).((((((((....))))).)))...))..).)))).))))))...)))).))).))). ( -55.00)
>DroEre_CAF1 9511 120 + 1
GGUUGAUCACGGCGCGCUUCUUGGGGCACUUGGGGUACAGGGAGUCGGUCUUGCCGUACUUCUCCACCAGGUACACCUGGAUGGCUCGGGACUCCCACAGCGCGAAUCCGUUGUCCACCA
(((.(((.((((((((((...(((((..((((((.....(((((((((.....))).))))))((((((((....))))).)))))))))..))))).))))))...)))).))).))). ( -56.20)
>DroYak_CAF1 8068 120 + 1
GGUUGAUCACGGCGCGCUUCUUGGGGCACUUGGGGUACAGGGAGUCGGUCUUGCCGUACUUCUCCACCAGGUACACCUGGAUGGCACGGGACUCCCACAGCGCGAAUCCGUUGUCCACCA
(((.(((.(((((((((((((..((...))..)))....(((((((((.....))...((...((((((((....))))).)))...)))))))))..))))))...)))).))).))). ( -53.80)
>consensus
GGUUGAUCACGGCGCGCUUCUUGGGGCACUUGGGGUACAGGGAGUCGGUCUUGCCGUACUUCUCCACCAGGUACACCUGGAUGGCGCGGGACUCCCACAGCGCGAAUCCGUUGUCCACCA
(((.(((.(((((((((((((..((...))..)))....(((((((((.....))...((.(.((((((((....))))).))).).)))))))))..))))))...)))).))).))). (-46.97 = -48.47 +   1.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:10 2006