Locus 3099

Sequence ID 3R_DroMel_CAF1
Location 8,191,138 – 8,191,253
Length 115
Max. P 0.911826
window5032

overview

Window 2

Location 8,191,138 – 8,191,253
Length 115
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.18
Mean single sequence MFE -41.90
Consensus MFE -41.11
Energy contribution -40.80
Covariance contribution -0.31
Combinations/Pair 1.09
Mean z-score -1.73
Structure conservation index 0.98
SVM decision value 1.08
SVM RNA-class probability 0.911826
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8191138 115 - 27905053
-----UAGACCCGGAUCUGCUCCCUGCCGCUCUGUUCUGAUGACAGCCAAGGCACUGGGUGUGGAGUUCGAUAAGAAGACCAUUAUCAACACCCGAGCUAGGGAGCAAUUCACGCCGGAA
-----.....((((...(((((((((..(((((((..((........))..)))..((((((.(....)(((((........))))).))))))))))))))))))).......)))).. ( -42.50)
>DroSim_CAF1 5305 115 - 1
-----UAGACCCGGAUCUGCUCCCUGCCGCUCUGUUCUGAUGACAGCCAAGGCACUGGGUGUGGAGUUCGAUAAGAAGACCAUUAUCAACACCCGAGCUGGGGAGCAAUUCACGCCGGAA
-----.....((((...(((((((((((...(((((.....)))))....)))..(((((((.(....)(((((........))))).)))))))....)))))))).......)))).. ( -41.90)
>DroEre_CAF1 5246 120 - 1
UACUACAGACCCGGAUCUGCUUCCUGCCGCUCUGUUCUGAUGACAGCCAAGGCACUGGGUGUGGAGUUCGAUAAGAAGAUCAUCAUCAACACCCGAGCCGGGGAGCAAUUCAAGCCGGAG
..........((((...(((((((((..(((((((..((........))..)))..((((((.((....(((......)))....)).))))))))))))))))))).......)))).. ( -41.30)
>DroYak_CAF1 5317 115 - 1
-----CAGACCCGGAUCUGCUCCCUGCCGCUCUGUUCUGAUGACAGCCAAGGCACUGGGUGUGGAGUUCGAUAAGAAGACCAUUAUCAACACCCGAGCUGGGGAGCAAUUCAAGCCGGAA
-----.....((((...(((((((((((...(((((.....)))))....)))..(((((((.(....)(((((........))))).)))))))....)))))))).......)))).. ( -41.90)
>consensus
_____CAGACCCGGAUCUGCUCCCUGCCGCUCUGUUCUGAUGACAGCCAAGGCACUGGGUGUGGAGUUCGAUAAGAAGACCAUUAUCAACACCCGAGCUGGGGAGCAAUUCAAGCCGGAA
..........((((...(((((((((..(((((((..((........))..)))..((((((.(....)(((((........))))).))))))))))))))))))).......)))).. (-41.11 = -40.80 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:53:06 2006