Locus 3096

Sequence ID 3R_DroMel_CAF1
Location 8,175,128 – 8,175,224
Length 96
Max. P 0.770271
window5025

overview

Window 5

Location 8,175,128 – 8,175,224
Length 96
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 83.89
Mean single sequence MFE -32.53
Consensus MFE -25.62
Energy contribution -26.43
Covariance contribution 0.81
Combinations/Pair 1.27
Mean z-score -2.12
Structure conservation index 0.79
SVM decision value 0.53
SVM RNA-class probability 0.770271
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8175128 96 - 27905053
AAGAAUAUUGUAUUGCCCGCGAAACCCGAGAGUGUGGCCAUUGUGGCCCACAGUUAUGGUGGCAGUCUUACUCUUGAUUUGGUGGGUAU------AAAAUUC----
..((((.((((...((((((.(((..((((((((..(((((..((((.....))))..))))).....)))))))).))).))))))))------)).))))---- ( -37.30)
>DroSec_CAF1 329 96 - 1
AAGAAUAUAGUGUUGCCCGCGAAACCGGAGAGUGUGGCCAUUGUGGCCCACAGUUAUGGUGGCAGUCUCACUCUUGAUCUGGUGGGUAU------AAGAUUC----
..((((....(((.((((((.(.....(((((((..(((((..((((.....))))..))))).....)))))))....).))))))))------)..))))---- ( -34.10)
>DroSim_CAF1 322 96 - 1
AAGAAUAUAGUGUUGCCCGCGAAACCGGAGAGUGUGGCCAUUGUGGCCCACAGUUAUGGUGGCAGUCUCACUCUUGAUCUGGUGGGUAU------AAGAUUC----
..((((....(((.((((((.(.....(((((((..(((((..((((.....))))..))))).....)))))))....).))))))))------)..))))---- ( -34.10)
>DroEre_CAF1 322 96 - 1
AAGAACAUAGUGUUGCCCGCGAAUCCGGAGAGUGUGGCCAUUGUGGCCCACAGUUACGGUGGUAGUCUCACUCUGGAUCUGGUGGGUAU------AAAAUGC----
.....(((..(((.((((((.(((((((((.(.(..(((((((((((.....)))))))))))...).).)))))))).).))))))))------)..))).---- ( -39.60)
>DroYak_CAF1 328 96 - 1
AAGAAUAUAGUGUUGCCCGCGAAACCGGAGAGUGUGGCUAUAGUGGCCCACAGCUACGGUGGCAGUCUCACUCUUGAUCUGGUAAGUAU------GGAAUUC----
..((((...((((((((..((....))(((((((..(((((.(((((.....))))).))))).....))))))).....))))).)))------...))))---- ( -27.80)
>DroAna_CAF1 289 106 - 1
AAGAAUAUAGUGAUACCCUCCAAUCCCGAGAGUGUGGCGAUUGUAGCUCACAGCUAUGGAGGCUUUCUUACAAUGGAUUUGGUAUGUAUUUGAAAAAAAUUGGAAU
..(((((((..((...((((((((((((......))).))))(((((.....))))))))))...))...(((.....)))...)))))))............... ( -22.30)
>consensus
AAGAAUAUAGUGUUGCCCGCGAAACCGGAGAGUGUGGCCAUUGUGGCCCACAGUUAUGGUGGCAGUCUCACUCUUGAUCUGGUGGGUAU______AAAAUUC____
.............(((((((.(.....(((((((..(((((((((((.....))))))))))).....)))))))....).))))))).................. (-25.62 = -26.43 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:59 2006