| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,169,185 – 8,169,278 |
| Length | 93 |
| Max. P | 0.744487 |
| Location | 8,169,185 – 8,169,278 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 77.91 |
| Mean single sequence MFE | -15.47 |
| Consensus MFE | -10.20 |
| Energy contribution | -10.53 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.744487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8169185 93 - 27905053 AAUUCAAUUUGUCAAUCAUAAAUUUCACGCUCUCUUAAUACAAAUUUGCGGGCAAUUGA--AAAAUUUCAAGUGCCUGUGUGU---CGAACUCGAACA .....(((((((.....))))))).......................(((((((.((((--(....))))).)))))))((.(---((....))))). ( -17.40) >DroPse_CAF1 98005 87 - 1 AAUUCAAUUUGUCAAUCAUAAAUUUCACGCACUCUUAAAAUAAAUUCGCAGGCAAUUGAUAAAAUUUUCAAGGGCCUGUGU-----------CAAGCA .....(((((((.....)))))))......................(((((((..((((........))))..))))))).-----------...... ( -17.20) >DroGri_CAF1 130624 94 - 1 AAUUCAAUUUGUCACUCAUAAAUUUCACGCUGUAUUAAAAUAAAUUUGUG-ACAAUUGA--AAAA-UUCAAGUGGUUGCCAUUCAGCAAAAUAGAGAA ..(((((((.(((((................................)))-))))))))--)...-(((......((((......))))......))) ( -13.15) >DroYak_CAF1 62609 85 - 1 AAUUCAAUUUGUCAAUCAUAAAUUUCACGCUCUCUUAAUAUAAAUUUGCGGGCAAUUGA--AAAAUUUCAAGUGCCUGUGU-----------CGAACA ..((((((((((.....))))))).......................(((((((.((((--(....))))).)))))))..-----------.))).. ( -16.10) >DroMoj_CAF1 133781 78 - 1 AAUUCAAUUUGUCACUCAUAAAUUUCACGCUGUAUUAGAAUAAAUUUGUG-ACAAUUGA--AAAA-UUCAAGUGGUUGCUAG---------------- ..(((((((.(((((........(((...........))).......)))-))))))))--)...-....(((....)))..---------------- ( -11.76) >DroPer_CAF1 100546 87 - 1 AAUUCAAUUUGUCAAUCAUAAAUUUCACGCACUCUUAAAAUAAAUUCGCAGGCAAUUGAUAAAAUUUUCAAGGGCCUGUGU-----------CAAGCA .....(((((((.....)))))))......................(((((((..((((........))))..))))))).-----------...... ( -17.20) >consensus AAUUCAAUUUGUCAAUCAUAAAUUUCACGCUCUCUUAAAAUAAAUUUGCGGGCAAUUGA__AAAAUUUCAAGUGCCUGUGU___________CGAGCA .....(((((((.....))))))).......................(((((((.((((........)))).)))))))................... (-10.20 = -10.53 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:56 2006