Locus 3092

Sequence ID 3R_DroMel_CAF1
Location 8,161,977 – 8,162,075
Length 98
Max. P 0.626167
window5020

overview

Window 0

Location 8,161,977 – 8,162,075
Length 98
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 82.94
Mean single sequence MFE -29.30
Consensus MFE -18.09
Energy contribution -18.48
Covariance contribution 0.39
Combinations/Pair 1.30
Mean z-score -2.37
Structure conservation index 0.62
SVM decision value 0.19
SVM RNA-class probability 0.626167
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8161977 98 + 27905053
CGAACCAACUCGAUUCACAACACCAC-GCGACUUGGCUUACCUUUUGUCGC--CGCCUUGGCCAAAAUGGUCCGGGGCGAUAUUUGCGUUAUUUACGAUUA
(((......)))..............-(((((..((....))....)))))--((((((((((.....)).)))))))).......(((.....))).... ( -27.70)
>DroSec_CAF1 55455 98 + 1
--UUCCAACUCGAAUCACAACACCAC-GCGACUUGGCUUACCUUUUGUCGCCCCGUCUUGGCCAAAAUGGUCCGGGGCGAUAUUUGCGUUAUUUACGAUUA
--..........((((........((-((((...((....))...((((((((((....((((.....)))))))))))))).)))))).......)))). ( -30.26)
>DroSim_CAF1 55053 98 + 1
--UUCCAACUCGAAUCACAACACCAC-GCGACUUGGCUUACCUUUUGUCGCCCCGUCUUGGCCAAAAUGGUCCGGGGCGAUAUUUGCGUUAUUUACGAUUA
--..........((((........((-((((...((....))...((((((((((....((((.....)))))))))))))).)))))).......)))). ( -30.26)
>DroEre_CAF1 56663 97 + 1
CGAUCCACCUCGUAUCACACCCAGUC-UUGGCUGGGUUUACCUUUUGUCGC--CGCC-UGGCCAAAAUGGUCCGGGGCGAUAUUUGCGUUAUUUACGAUUA
.........(((((..(((((((((.-...)))))))........((((((--(.((-.((((.....)))).))))))))).....))....)))))... ( -36.00)
>DroYak_CAF1 55590 92 + 1
CGAUCCACCUUGAAUCACACCAACUC-UUGGC-----UUACCU-UUGUCGC--CGCCUUGGCCAAAAUGGUCCGGGGCGAUAUUUGCGUUAUUUACGAUUA
.((((.....(((((.((.(((....-.))).-----......-.((((((--(.((..((((.....)))).))))))))).....)).))))).)))). ( -22.10)
>DroAna_CAF1 60593 93 + 1
-GUUU---CCCCAACCAUAAC--CACUGAGCCUUGGCUUACCUUUUGUCGC--GGCUCUGGCCAAAAUGGUCUGGGGCGAUAUUUGCGUUAUUUACGAUUA
-(((.---((((((((((..(--((..(((((.((((.........)))).--)))))))).....))))).))))).))).....(((.....))).... ( -29.50)
>consensus
_GAUCCAACUCGAAUCACAACACCAC_GCGACUUGGCUUACCUUUUGUCGC__CGCCUUGGCCAAAAUGGUCCGGGGCGAUAUUUGCGUUAUUUACGAUUA
...........................(((((..((....))....)))))..((((((((((.....)).)))))))).......(((.....))).... (-18.09 = -18.48 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:54 2006