Locus 3091

Sequence ID 3R_DroMel_CAF1
Location 8,160,487 – 8,160,603
Length 116
Max. P 0.755943
window5019

overview

Window 9

Location 8,160,487 – 8,160,603
Length 116
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 75.47
Mean single sequence MFE -33.68
Consensus MFE -18.67
Energy contribution -20.20
Covariance contribution 1.53
Combinations/Pair 1.19
Mean z-score -1.71
Structure conservation index 0.55
SVM decision value 0.49
SVM RNA-class probability 0.755943
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8160487 116 + 27905053
C--GUUCUCGGAUUUUAAUUCUAUUAGAGAGCCGAGGACGUGAGACAAGGCCGCUUAUCGUGGCUGCCGCACACACCCACUUAUGCAUGGGCAACCACCGAUUCGUCCAUACACCACC
.--((((((((.(((((((...)))))))..))))))))(((.(....((((((.....))))))....).))).........((.((((((............)))))).))..... ( -34.60)
>DroGri_CAF1 119920 95 + 1
CGCUUUUUGGGAUUUUAAUUCUAUUAGA----CGAGGCCAC-AGGCU-GGCCGCUUAUCGCUGCCGGCACACAUGUCGCCUGCUGC-----UAACA-UCCC---G-CC-C---CC---
........(((((.(((..((.....))----..((((.((-(.(((-(((.((.....)).)))))).....))).)))).....-----))).)-))))---.-..-.---..--- ( -29.30)
>DroSec_CAF1 54063 97 + 1
C--GUUCUCGGAUUUUAAUUCUAUUAGAGGGCCGAGGACGUGAGACAAGGCCGCUUAUCGUGGCUGCCGCACACACCCACUUAUGCAUGGGCAACC-------------------ACC
.--((((((((.(((((((...)))))))..))))))))(((.(....((((((.....))))))....).))).............(((....))-------------------).. ( -34.20)
>DroSim_CAF1 53633 97 + 1
C--GUUCUCGGAUUUUAAUUCUAUUAGAGGGCCGAGGACGUGAGACAAGUCUGCUUAUCGUGGCUGCCGCACACACCCACUUAUGCAUGGGCAACC-------------------ACC
(--((((((((.(((((((...)))))))..)))))))))...((.(((....))).))((((.((((.((..((........))..)))))).))-------------------)). ( -31.80)
>DroEre_CAF1 55129 113 + 1
C--GUUCUCGGAUUUUAAUUCUAUUAGAGGGCCGAGGACGUGAGACAAGGCCGCUUAUCGUGCCUGCCACACUCACCCACUUAUGCAUGGCUGGCCACCCAGUCACCCAC---CCACC
.--((((((((.(((((((...)))))))..))))))))(((((...((((((.....)).))))......))))).......((..(((((((....)))))))..)).---..... ( -37.10)
>DroYak_CAF1 54061 113 + 1
C--GUUCUCGGAUUUUAAUUCUAUUAGAGGGCCGAGGACGUGAGACAAGGCCGCUUAUCGUGGGUGCCGCACACACCCACUUAUGCAUGGCUAACCACCCAUUCACCCAC---CCGCC
(--((((((((.(((((((...)))))))..)))))))))........(((.((.....(((((((.......)))))))....))((((........))))........---..))) ( -35.10)
>consensus
C__GUUCUCGGAUUUUAAUUCUAUUAGAGGGCCGAGGACGUGAGACAAGGCCGCUUAUCGUGGCUGCCGCACACACCCACUUAUGCAUGGGCAACC_CCCA_____CC_C___CCACC
...((((((((.(((((((...)))))))..))))))))(((.(....((((((.....))))))....).)))..............((....))...................... (-18.67 = -20.20 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:53 2006