Locus 3090

Sequence ID 3R_DroMel_CAF1
Location 8,153,418 – 8,153,513
Length 95
Max. P 0.893683
window5018

overview

Window 8

Location 8,153,418 – 8,153,513
Length 95
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 79.49
Mean single sequence MFE -30.54
Consensus MFE -17.73
Energy contribution -16.82
Covariance contribution -0.91
Combinations/Pair 1.26
Mean z-score -2.32
Structure conservation index 0.58
SVM decision value 0.98
SVM RNA-class probability 0.893683
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8153418 95 + 27905053
AAAUCCAUUUUUUCCAUUAAAUCGAGUCGCUGAUUGUGCAUGAAGCACUG----CGGGGAGGCGCAAAUGUCAGG--GCUCUUUGGUUAGAUGGGGGCGCC
..........(..(((((.(((((((((.(((((.((((.....))))((----((......))))...))))))--))))...)))).)))))..).... ( -30.70)
>DroVir_CAF1 113052 87 + 1
AAAUUCAUUUUUUCCAUUAAAUCGAACCGUUGAUUGUGCAUGAAGCGC---------ACAGGCACAAAUGUCAAC--GCU---CGGUUAGAUGGCACCAGC
.............(((((.((((((..((((((((((((.((......---------.)).)))))...))))))--).)---))))).)))))....... ( -25.40)
>DroPse_CAF1 80176 101 + 1
AAAUUCAUUUUUUCCAUUAAAUCGAGCCGUUGAUUGUGCAUGAAGCCUCAUCGGGCGGGGGGCACAAAUGUCAGGGGGCUCUUCGGUUAGAUGGGGGCGUU
..........(..(((((.(((((((((.((((((((((.....((((....)))).....)))))...))))).))....))))))).)))))..).... ( -34.30)
>DroGri_CAF1 111323 87 + 1
AAAUUCAUUUUUUCCAUUAAAUCGAACCGUUGAUUGUGCAUGAAGCGC---------ACAUGCACAAAUGUCAAC--GUU---CGGUUAGAUGGCAGCAGC
.............(((((.((((((((.((((((((((((((......---------.))))))))...))))))--)))---))))).)))))....... ( -32.00)
>DroAna_CAF1 43920 87 + 1
AAAUUCAUUUUUUCCAUUAAAUCGAGCCGUUGAUUGUGCAUGAAG---------UGAGGAGGCGCAAAUGUCAGG--GCU--UCGGUUAGAUGG-GGCGCU
...........(((((((.(((((((((.((((((((((......---------.......)))))...))))))--)).--)))))).)))))-)).... ( -26.52)
>DroPer_CAF1 81582 101 + 1
AAAUUCAUUUUUUCCAUUAAAUCGAGCCGUUGAUUGUGCAUGAAGCCUCAUCGGGCGGGGGGCACAAAUGUCAGGGGGCUCUUCGGUUAGAUGGGGGCGUU
..........(..(((((.(((((((((.((((((((((.....((((....)))).....)))))...))))).))....))))))).)))))..).... ( -34.30)
>consensus
AAAUUCAUUUUUUCCAUUAAAUCGAGCCGUUGAUUGUGCAUGAAGCCC________GGGAGGCACAAAUGUCAGG__GCU__UCGGUUAGAUGGGGGCGCC
.............(((((.((((((((..((((((((((......................)))))...)))))...)))...))))).)))))....... (-17.73 = -16.82 +  -0.91)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:52 2006