Locus 3087

Sequence ID 3R_DroMel_CAF1
Location 8,139,131 – 8,139,225
Length 94
Max. P 0.903481
window5007

overview

Window 7

Location 8,139,131 – 8,139,225
Length 94
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 95.10
Mean single sequence MFE -29.82
Consensus MFE -26.46
Energy contribution -27.34
Covariance contribution 0.88
Combinations/Pair 1.08
Mean z-score -1.49
Structure conservation index 0.89
SVM decision value 1.03
SVM RNA-class probability 0.903481
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8139131 94 - 27905053
CGCGCCAUCCUCUCAGCCUUCCUGAAAGACAUUUGUAGUUCUCGGCUUAGUUUUGGUCUGGGAUUCGUUCUGGGGUCCCCGACAUCUCGGUGCA
.(((((.....((.((((.....(((..((....))..)))..)))).)).....(((.(((((((......))))))).))).....))))). ( -32.60)
>DroSec_CAF1 32755 94 - 1
CGCGCCAUCCUCUCAGCCUUCCUGAAAGACAUUUGUAGUUCUCUGCUAAGUUUUGGUCUGGGAUUCGUUCUGGGGUCCCCGACAUCUCGGUGCA
.(((((......((((.....))))(((((.((.((((....)))).))))))).(((.(((((((......))))))).))).....))))). ( -31.30)
>DroSim_CAF1 35138 94 - 1
CGCGCCAUCCUCUCAGCCUUCCUGAAAGACAUUUGUAGUUCUCGGCUUAGUUUUGGUCUGGGAUUCGUUCUGGGGUCCCCGACAUCUCGGUGCA
.(((((.....((.((((.....(((..((....))..)))..)))).)).....(((.(((((((......))))))).))).....))))). ( -32.60)
>DroEre_CAF1 32585 93 - 1
CGCGCCAUCCUCUCAGCCUUCCUGAAAGACAUUUGUAGUUCUCGGCUUAGUU-UGGUCUGGGAUUCGUUCUGGGGUCCCCGACAUCUCGAUGCA
...((.(((..((.((((.....(((..((....))..)))..)))).))..-..(((.(((((((......))))))).))).....))))). ( -26.30)
>DroYak_CAF1 32052 93 - 1
CGCGCCAUCCUUCCAGCGGUCCUUAAAGACAUUUGUAGUUCUCGACUUAGUU-UGGUCUGGGAUUCGUUCUGGGGUUCCCGACAUCUCGGUGCA
.((((((((((...(((((((((...((((......((((...)))).....-..)))))))).)))))..)))))....((....))))))). ( -26.32)
>consensus
CGCGCCAUCCUCUCAGCCUUCCUGAAAGACAUUUGUAGUUCUCGGCUUAGUUUUGGUCUGGGAUUCGUUCUGGGGUCCCCGACAUCUCGGUGCA
.(((((.....((.((((.....(((..((....))..)))..)))).)).....(((.(((((((......))))))).))).....))))). (-26.46 = -27.34 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:42 2006