Locus 3086

Sequence ID 3R_DroMel_CAF1
Location 8,137,982 – 8,138,081
Length 99
Max. P 0.575809
window5006

overview

Window 6

Location 8,137,982 – 8,138,081
Length 99
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 78.35
Mean single sequence MFE -30.45
Consensus MFE -15.71
Energy contribution -16.46
Covariance contribution 0.75
Combinations/Pair 1.28
Mean z-score -1.88
Structure conservation index 0.52
SVM decision value 0.08
SVM RNA-class probability 0.575809
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8137982 99 - 27905053
UUGUCCAG-CUCAGCGUCUAUUUUCCAGUUAAUUGCGCUGACAGCAUCAAGCUGAGUAU-----UAAACCGAUCUAGGGCUCCUGCAUUUUCAGCCAGGAGUGCA
.......(-((((((((..(((........))).)))))))((((.....)))).....-----....((......))((((((((.......).))))))))). ( -27.80)
>DroSec_CAF1 31584 99 - 1
UUGUCCAG-CUCAGCGUCGAUUUUCCAGUUAAUUGCGCUGACAGCAUCAAGCUGAGUAU-----UAAACAGAUCUAGGGCUCCUGCAUUUUCAGCCAGGAGUGCA
((((....-.((((((.(((((........)))))))))))((((.....)))).....-----...)))).....(.((((((((.......).))))))).). ( -30.20)
>DroSim_CAF1 33970 99 - 1
UUGUCCAG-CUCAGCGUCGAUUUUCCAGUUAAUUGCGCUGACAGCAUCAAGCUGAGUAU-----UAAACAGAUCUAGGGCUCCUGCAUUUUCAGCCAGGAGUGCA
((((....-.((((((.(((((........)))))))))))((((.....)))).....-----...)))).....(.((((((((.......).))))))).). ( -30.20)
>DroEre_CAF1 31414 99 - 1
UUGUCCAG-CUCUGCGUCUAUUUUCCAGUUAAUUCUGCUGACAGCAUCAAGCUGGGUAU-----UGAACAGAGCGAGGGCUUCAGAAUUUUGAGCCCGAAGUGCA
.((..(.(-(((((..((.....(((((((.....(((.....)))...)))))))...-----.)).))))))..(((((.(((....))))))))...)..)) ( -31.80)
>DroYak_CAF1 30898 99 - 1
UUGUCCAG-UUCAGCGUCUAUUUUCCAGUUAAUUGUGCUGACAGCAUCAAGCUGUGUAU-----UGGACAGAGCGAGGGCUCCUGAGUUUUGAGCUAGGAGUGCA
((((((((-(.(((((.(.(((........))).))))))(((((.....)))))..))-----))))))).....(.((((((.(((.....))))))))).). ( -33.90)
>DroPer_CAF1 61527 99 - 1
UUUUCAAGACUCCAAGU-GAUGUUUCUGUUAAUGGCAAGGAUAUC-----GCUGAGCAAUAUCAUUGAUAGGUUAAGGGCAGCGGUGUUCUUAGCGAAAAGUGCC
(((((..(.(((..(((-((((((..(((.....)))..))))))-----)))))))..............((((((((((....)))))))))))))))..... ( -28.80)
>consensus
UUGUCCAG_CUCAGCGUCGAUUUUCCAGUUAAUUGCGCUGACAGCAUCAAGCUGAGUAU_____UAAACAGAUCUAGGGCUCCUGCAUUUUCAGCCAGGAGUGCA
..........((((((...................))))))((((.....))))......................(.(((((((..........))))))).). (-15.71 = -16.46 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:41 2006