| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,133,789 – 8,133,888 |
| Length | 99 |
| Max. P | 0.770624 |
| Location | 8,133,789 – 8,133,888 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 75.85 |
| Mean single sequence MFE | -23.22 |
| Consensus MFE | -16.08 |
| Energy contribution | -15.56 |
| Covariance contribution | -0.53 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.770624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8133789 99 - 27905053 --ACGU----ACAUAU-------------AAAGUCAAUCG-GGGCCAAGAAACGUUUGUCAAUUCGAAUUACGAAUUACGAAUUACGACAAAGUGCGCUUAAGUUAUGUGCAUGUUUCG --....----......-------------...(((.....-.)))...(((((.(((((((((((((((.....))).))))))..))))))((((((.........))))))))))). ( -22.00) >DroPse_CAF1 56517 78 - 1 --A--------------------------------GACCAUGGCCAAAGGAACGUUUGUCAAUUCGAAUUAC-------GAAUUACGACAAAGUGCGCUUAAGUUAUGUGCGUGUUUCG --.--------------------------------.............((((((((((((((((((.....)-------)))))..))))))..((((.........)))).)))))). ( -18.40) >DroSim_CAF1 29600 96 - 1 --ACAUACAUACAUAA-------------AAAGGCGAUCG-GGGCCAAGAAACGUUUGUCAAUUCGAAUUAC-------GAAUUACGACAAAGUGCGCUUAAGUUAUGUGCGUGUUUCG --..((((.(((((((-------------...(((.....-..)))(((..((.((((((((((((.....)-------)))))..))))))))...)))...))))))).)))).... ( -23.80) >DroYak_CAF1 26690 96 - 1 --ACAUAUCUACAUAU-------------AAAGGCGAUGG-GGGCCAAGAAACGUUUGUCAAUUCGAAUUAC-------GAAUUACGACAAAGUGCGCUUAAGUUAUGUGCGUGUUUCG --..............-------------...(((.....-..)))..((((((((((((((((((.....)-------)))))..))))))..((((.........)))).)))))). ( -23.20) >DroAna_CAF1 24385 111 - 1 AAAAAUAUAUAUGUAUUCGGAGGGAACUCCAAGGCGACUG-GGGCCAUGGAACGUUUGUCAAUUCGAAUUAC-------GAAUUACGACAAAGUGCGCUUAAGUUAUGUGCGUGUUCCG ..................((((....))))..(((.....-..)))..((((((((((((((((((.....)-------)))))..))))))..((((.........)))).)))))). ( -33.50) >DroPer_CAF1 56656 78 - 1 --A--------------------------------GACCAUGGCCAAAGGAACGUUUGUCAAUUCGAAUUAC-------GAAUUACGACAAAGUGCGCUUAAGUUAUGUGCGUGUUUCG --.--------------------------------.............((((((((((((((((((.....)-------)))))..))))))..((((.........)))).)))))). ( -18.40) >consensus __ACAU____ACAUAU_____________AAAGGCGACCG_GGGCCAAGAAACGUUUGUCAAUUCGAAUUAC_______GAAUUACGACAAAGUGCGCUUAAGUUAUGUGCGUGUUUCG ................................................(((((((((((((((((..............)))))..)))))).(((((.........))))))))))). (-16.08 = -15.56 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:40 2006