| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,131,905 – 8,132,002 |
| Length | 97 |
| Max. P | 0.656488 |
| Location | 8,131,905 – 8,132,002 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 81.62 |
| Mean single sequence MFE | -22.99 |
| Consensus MFE | -13.09 |
| Energy contribution | -14.20 |
| Covariance contribution | 1.11 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.656488 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8131905 97 + 27905053 UGUAAUUGGAAAACAAAUUCCAAAUGCCUAAUUUAUGACUUGUGCGAAAUGGCCA--GAAAUUUAUUAUGUCCCUCAAGAAGCUGGGAUGGGGUCAAAC-- .(((.((((((......)))))).)))........(((((((.((......))).--............(((((..........))))).))))))...-- ( -20.10) >DroPse_CAF1 54394 92 + 1 UGUAAUUGGAAAACAAAUUCCAAUUGCCUAAUUUAUGACUUGUGCAAAAUUGCUG--GAUAUUUAUUAUGUCCCUAGACAACGG-----CGGGUCAAAC-- .((((((((((......))))))))))........(((((((((((....))).(--(((((.....))))))..........)-----)))))))...-- ( -27.20) >DroEre_CAF1 25461 99 + 1 UGUAAUUGGAAAACAAAUUCCAAUUGCCUAAUUUAUGACUUGUGCGAAAUGGCCA--GAUAUUUAUUAUGUCCCUCAAGGAGCUGGGAUGGGGUUAUACUC .((((((((((......))))))))))......(((((((((.((......))).--............(((((..........))))).))))))))... ( -23.60) >DroWil_CAF1 55648 84 + 1 UGUAAUUGGAAAACAAAUUCCAAUUGCCUAAUUUAUGACUUUUG-AAAAUGACCAAAGAUAUUUAUUAUGCACCUCGAG-------------GUCAA-U-- .((((((((((......)))))))))).................-....(((((...((...............))..)-------------)))).-.-- ( -15.96) >DroAna_CAF1 22637 92 + 1 UGUAAUUGGAAAACAAAUUCCGAUUGCCUAAUUUAUGACUUUUGUGAAAUUGCCA--CAAAUUUAUUAUGUCCCUCAAGGAGCGG-----GGGUCAAAC-- .((((((((((......)))))))))).......((((..((((((.......))--)))).))))..((.(((((.......))-----))).))...-- ( -23.90) >DroPer_CAF1 54542 92 + 1 UGUAAUUGGAAAACAAAUUCCAAUUGCCUAAUUUAUGACUUGUGCAAAAUUGCUG--GAUAUUUAUUAUGUCCCUAGACAACGG-----CGGGUCAAAC-- .((((((((((......))))))))))........(((((((((((....))).(--(((((.....))))))..........)-----)))))))...-- ( -27.20) >consensus UGUAAUUGGAAAACAAAUUCCAAUUGCCUAAUUUAUGACUUGUGCAAAAUGGCCA__GAUAUUUAUUAUGUCCCUCAAGAAGCG______GGGUCAAAC__ .((((((((((......))))))))))........((((((..((......))....(((((.....)))))..................))))))..... (-13.09 = -14.20 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:39 2006