| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,126,714 – 8,126,806 |
| Length | 92 |
| Max. P | 0.605875 |
| Location | 8,126,714 – 8,126,806 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.38 |
| Mean single sequence MFE | -29.70 |
| Consensus MFE | -23.24 |
| Energy contribution | -23.27 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.605875 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8126714 92 + 27905053 UCGAUGUGACACACGAUGUGGCGCCAAUUGACAACAACUUGAUCAUCGGCCGCAGCUGUGGCGGCUGC------------------------AACGCUCAACAUCA---AUUCCGGCGG- ..((((((((((.....)))(((((...((((((....))).)))..))).(((((((...)))))))------------------------...)))).))))).---..........- ( -27.10) >DroVir_CAF1 69297 116 + 1 UCGAUGUGACACACAAUGUGGCGCCAAUUGACAACAACUUGAUCAUCAGCCGCAGCUGUGGCGGCCGCUGUGGCAGCCAAUCAUAGCAACACUUCGCUCAACAUCA---AUCCCUGCAA- ..((((((((......((((((......((((((....))).)))...))))))(((((((.(((.((....)).)))..)))))))........).)).))))).---..........- ( -33.50) >DroGri_CAF1 84086 111 + 1 UCGAUGUGACACACAAUGUGGCGCCAAUUGACAACAACUUGAUCAUCAGCCGCAGCUGUGGCGGCCGCUGUGGCAGCCAAUCAUAGCAACACUACGCUCAACAUCA---AUCCC------ ..((((((((......((((((......((((((....))).)))...))))))(((((((.(((.((....)).)))..)))))))........).)).))))).---.....------ ( -33.50) >DroWil_CAF1 45916 95 + 1 UCAAUGUGACACACAAUGUGGCGCCAAUUGACAACAACUUGAUCAUCGGCCGCAGCUGUGGCGGCUGC------------------------AACGCUCAAUAUCAACAAUCCCAGUAA- ....((((((((.....)))(((((...((((((....))).)))..))).(((((((...)))))))------------------------...))......)).)))..........- ( -22.40) >DroMoj_CAF1 82232 116 + 1 UCGAUGUGACACACAAUGUGGCGCCAAUUGACAACAACUUGAUCAUCAGCCGCAGCUGUGGCGGCCGCUGUGGCAGCCAAUCAUAGCAGCACUACGCUCAACAUCA---AUCCCUGCAA- ..(((((((..((((.((((((......((((((....))).)))...))))))..))))(((((.(((((((.......))))))).))....))))).))))).---..........- ( -34.60) >DroAna_CAF1 17789 93 + 1 UCGAUGUGACACACGAUGUGGCGCCAAUUGACAACGACUUGAUCAUCGGCCGCAGCUGUGGCGGCUGC------------------------AACGCUCAACAUCA---AUCCCGGCGUA ..((((((((((.....)))(((((...((((((....))).)))..))).(((((((...)))))))------------------------...)))).))))).---........... ( -27.10) >consensus UCGAUGUGACACACAAUGUGGCGCCAAUUGACAACAACUUGAUCAUCAGCCGCAGCUGUGGCGGCCGC________________________AACGCUCAACAUCA___AUCCCGGCAA_ ..((((((((((.....)))(((((...((((((....))).)))...(((((....)))))))).)).............................)).)))))............... (-23.24 = -23.27 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:37 2006