Locus 3081

Sequence ID 3R_DroMel_CAF1
Location 8,125,666 – 8,125,769
Length 103
Max. P 0.581374
window5001

overview

Window 1

Location 8,125,666 – 8,125,769
Length 103
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 93.98
Mean single sequence MFE -32.63
Consensus MFE -27.82
Energy contribution -28.02
Covariance contribution 0.19
Combinations/Pair 1.04
Mean z-score -1.54
Structure conservation index 0.85
SVM decision value 0.10
SVM RNA-class probability 0.581374
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8125666 103 - 27905053
AUUUUCCAUCUUGUCGGCCGCUAGCCGUGGCAUUUAAUUACAGCGAUGCUAGAUUGCGCAUACGCAGCGUGUGCCGUCGAGUGUUAAUUGCCAGGCACCAAAA
...........(((((((.....))).(((((.(((((.....((((((......))(((((((...))))))).))))...))))).)))))))))...... ( -31.90)
>DroSec_CAF1 19302 103 - 1
AUUUUCCAUCUUGUCGGCGGCUAGCCGUGGCAUUUAAUUACAGCGAUGCUAGAUUGCGCAUACGCAGCGUGUGCCGUCGAGUGUUAAUUGCCAGGCACCAAAA
...........(((((((.....))).(((((.(((((.....((((((......))(((((((...))))))).))))...))))).)))))))))...... ( -33.10)
>DroSim_CAF1 20888 103 - 1
AUUUUCCAUCUUGUCGGCGGCUAGCCGUGGCAUUUAAUUACAGCGAUGCUAGAUUGCGCAUACGCAGCGUGUGCCGUCGAGUGUUAAUUGCCAGGCACCAAAA
...........(((((((.....))).(((((.(((((.....((((((......))(((((((...))))))).))))...))))).)))))))))...... ( -33.10)
>DroEre_CAF1 18878 103 - 1
AUUUUCCAUCUUGUCGGCCGCUAGCCGUGGCAUUUAAUUACAUCGAUGCUAGAUUGCGCAUACGCAGCGUGUGCCGUCGAGUGUUAAUUGCCAGGCACCAAGA
........(((((.((((.....))))(((((.(((((.((.(((((((......))(((((((...))))))).)))))))))))).))))).....))))) ( -35.30)
>DroYak_CAF1 18435 103 - 1
CUUUUCCAUCUUGUCGGCGGCUAGCCGUGGCAUUUAAUUACAACGAUGCUAGAUUGCGCAUACGCAGCGUGUGCCGUCGAGUGUUAAUUGCCAGGCACCAAAA
...........(((((((.....))).(((((.(((((.((..((((((......))(((((((...))))))).)))).))))))).)))))))))...... ( -32.20)
>DroAna_CAF1 16716 96 - 1
CUUUUCCAUCAUGU-------UAGCCAUGGCAUUUAAUUACAGCAAUGGUAGAUUGCGCAUACGCAGCGUGUGCCGCGGAGUGUUAAUUGCCAGGCACCAAAA
..............-------..(((.(((((.(((((.((.(((((.....)))))(((((((...)))))))......))))))).))))))))....... ( -30.20)
>consensus
AUUUUCCAUCUUGUCGGCGGCUAGCCGUGGCAUUUAAUUACAGCGAUGCUAGAUUGCGCAUACGCAGCGUGUGCCGUCGAGUGUUAAUUGCCAGGCACCAAAA
.......................(((.(((((.(((((.((.(((((.....)))))(((((((...)))))))......))))))).))))))))....... (-27.82 = -28.02 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:36 2006