| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,120,712 – 8,120,813 |
| Length | 101 |
| Max. P | 0.932273 |
| Location | 8,120,712 – 8,120,813 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 74.97 |
| Mean single sequence MFE | -42.15 |
| Consensus MFE | -21.58 |
| Energy contribution | -23.08 |
| Covariance contribution | 1.50 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.51 |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.932273 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8120712 101 - 27905053 GCGGGAGCGGUUGC---CAGCGAAGUACUCAGCGGCGAGGCGGUU---AGGUUGCGGGAGGACGAACCGCUUUGCGAUUGAGUAGGAAGCGAGGCGCCUAGCCCGCU (((((...(((.((---(.((....(((((((..(((((((((((---..(((.(....)))).)))))))))))..)))))))....))..))))))...))))). ( -51.20) >DroVir_CAF1 57822 101 - 1 GCGGCGGUGGUUGC---UAC---UGUGCUGCGCGGUGAGGCGGUGUAUGAAUUGUGGGAGGAUGAGGCGCUGUGGGAGUGUGUGGGCAGCGAUGCGCCCAGGCCGCU ((((((((((...)---)))---)..)))))(((((...(((((((....(((.......)))...))))))).........(((((.((...))))))).))))). ( -36.30) >DroGri_CAF1 76102 101 - 1 GCGGCGGUUGUUGCGGCCAC---CGUGCUCAGCGGUGACGCGGUG---GAAUUUAUAGAGGACGAACCGCUUUGGGAUUGUGUGGGCAGCGAGGCACCCAAGCCACU ((((((((((((.(..((((---((((.(((....))))))))))---)........)..))).)))))))(((((..(((.(.(....).).)))))))))).... ( -35.90) >DroEre_CAF1 13962 101 - 1 GCGGGAGCGGUUGC---CAGCGAAGUACUCAGCGGCGAGGCGGUU---AGGUUGCGGGAGGACGAACCGCUUUGCGAUUGAGUAGGAAGCGAGGCGCCCAGCCCGCU (((((...(((.((---(.((....(((((((..(((((((((((---..(((.(....)))).)))))))))))..)))))))....))..))))))...))))). ( -51.20) >DroWil_CAF1 38598 101 - 1 AUGGAGGAGGAGAC---CAGGGAAUUACUCAGAGGCGAGGCGGUU---AGGUUAAGGGAGGACGAACCGCUUUGCGAUUGAGUAGGUAGCGAUGAGCCCAAGCCACU .(((..(.(....)---).(((..((((((((..(((((((((((---..(((.......))).)))))))))))..))))))))...........)))...))).. ( -34.72) >DroAna_CAF1 12383 96 - 1 --GGGUGGG---GC---CAGCGAAGUACUCAGAGGCGAGGCGGUU---AGGUGGAGGGAGGACGAACCGCUUUGCGAUUGAGUAGGAAGCGAGGCGCCCAGACCGCU --((.((((---((---(.((....(((((((..(((((((((((---..((.........)).)))))))))))..)))))))....))..))).))))..))... ( -43.60) >consensus GCGGGGGCGGUUGC___CAGCGAAGUACUCAGCGGCGAGGCGGUU___AGGUUGAGGGAGGACGAACCGCUUUGCGAUUGAGUAGGAAGCGAGGCGCCCAGGCCGCU (((((....................(((((((..((((((((((.....................))))))))))..)))))))((..((.....))))..))))). (-21.58 = -23.08 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:33 2006