Locus 3076

Sequence ID 3R_DroMel_CAF1
Location 8,111,596 – 8,111,703
Length 107
Max. P 0.500000
window4994

overview

Window 4

Location 8,111,596 – 8,111,703
Length 107
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 81.29
Mean single sequence MFE -24.84
Consensus MFE -19.54
Energy contribution -19.10
Covariance contribution -0.44
Combinations/Pair 1.11
Mean z-score -1.34
Structure conservation index 0.79
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8111596 107 + 27905053
UUUUCGUAUUUUUUAUAUAUAUUUUGUGUUUUUUUGAUUUUGUGGUGAGUGGGCGUGGUCAAAACGCCCGCAGCAGCAAAUUUCUUAUUUAUUAAUUAGCAGGAGGC
.....................((((.((((...((((((((((.((..((((((((.......)))))))).)).)))))..........)))))..)))).)))). ( -24.40)
>DroEre_CAF1 4841 96 + 1
UUUUCAUAUUUUUUGUAU-----------UUUUUGUAUUUUUUGGGGAGUGGGCGUGGUCCAAACGCCCGCAGCAGCAGAUUUCUUAUUUAUUAAUUAGCAAGAGGC
........((((((((..-----------.....(((.....((((((((((((((.......))))))((....))..))))))))..)))......)))))))). ( -21.32)
>DroYak_CAF1 4329 95 + 1
UUCUCGUAUUUUUUGCAC-----------UU-UUGUGGGGAGUGGGGAGUGGGCGUGGUCAAAACGCCCGCAGCAGCAAAUUUCUUAUUUAUUAAUUAGCAAGAGGC
..............((.(-----------((-((((...(((((((((((((((((.......))))))((....))..)))))))))))........))))))))) ( -28.80)
>consensus
UUUUCGUAUUUUUUGUAU___________UUUUUGUAUUUUGUGGGGAGUGGGCGUGGUCAAAACGCCCGCAGCAGCAAAUUUCUUAUUUAUUAAUUAGCAAGAGGC
.((((...........................................((((((((.......))))))))....((.((((...........)))).))..)))). (-19.54 = -19.10 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:30 2006