| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,107,889 – 8,107,988 |
| Length | 99 |
| Max. P | 0.500000 |
| Location | 8,107,889 – 8,107,988 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.53 |
| Mean single sequence MFE | -30.32 |
| Consensus MFE | -21.51 |
| Energy contribution | -21.07 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.22 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8107889 99 + 27905053 AUCGACAGCAAGCAGAACAUCGAGUGCGUCGUCUGCGGCGACAAGAGUUCCGGCAAGCACUACGGACAAUUUACCUGCGAAGGUGAGUACACUG---CGAG------------A------ ...........((((....(((((((((((((.....)))))....((....))..))))).)))...((((((((....))))))))...)))---)...------------.------ ( -31.90) >DroVir_CAF1 37572 116 + 1 AUUGACUCCAAACAGAACAUCGAGUGCGUCGUCUGCGGCGACAAGAGUUCCGGCAAGCACUACGGACAAUUUACGUGUGAAGGUGAGUACAGCA----GAGGGGUUGUGCAAGGAGGAGU ....(((((........((((.((((((((((.....)))))....((....))..))))).((.((.......)).))..)))).(((((((.----.....))))))).....))))) ( -35.80) >DroGri_CAF1 57947 112 + 1 AUCGAUUCCAAACAGAGCAUCGAGUGCGUCGUCUGCGGCGACAAGAGCUCCGGCAAACACUACGGUCAAUUUACCUGUGAAGGUGAGUAACACACAAAAAGGGAGUAAGCAA-------- .(((((.(........).))))).((((((((.....)))))....((((((((..........))).((((((((....)))))))).............)))))..))).-------- ( -31.10) >DroWil_CAF1 24135 91 + 1 AUCGAUUCCAAACAGAAUAUCGAGUGUGUUGUUUGCGGCGACAAGAGUUCCGGCAAACAUUACGGACAGUUUACCUGUGAAGGUGAGUAAU----------------------------- .(((((((......))..)))))((.((((((((((.(.(((....))).).)))))))..))).))..(((((((....)))))))....----------------------------- ( -25.30) >DroMoj_CAF1 56793 102 + 1 AUCGACUCCAAACAGAACAUCGAGUGCGUCGUCUGCGGCGACAAGAGCUCCGGCAAGCACUACGGACAAUUUACCUGUGAAGGUGAGUACCCCA----GCCGGGCC-------------- .((((.((......))...))))((.(((((....)))))))....((.(((((.....(....)...((((((((....))))))))......----))))))).-------------- ( -31.90) >DroAna_CAF1 589 92 + 1 AUCGACAGCAAGCAGAACAUCGAGUGCGUGGUGUGCGGCGACAAGAGCUCCGGCAAGCACUACGGCCAGUUUACCUGCGAAGGUGAGUCAA---------G------------------- ...(((.(((..(........)..)))(((((((.(((.(.(....)).)))....))))))).......((((((....)))))))))..---------.------------------- ( -25.90) >consensus AUCGACUCCAAACAGAACAUCGAGUGCGUCGUCUGCGGCGACAAGAGCUCCGGCAAGCACUACGGACAAUUUACCUGUGAAGGUGAGUAAA_CA____GAG___________________ ...................(((((((((((((.....)))))....((....))..))))).)))...((((((((....))))))))................................ (-21.51 = -21.07 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:27 2006