Locus 3073

Sequence ID 3R_DroMel_CAF1
Location 8,105,063 – 8,105,161
Length 98
Max. P 0.946407
window4990

overview

Window 0

Location 8,105,063 – 8,105,161
Length 98
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 77.49
Mean single sequence MFE -48.02
Consensus MFE -29.65
Energy contribution -31.05
Covariance contribution 1.40
Combinations/Pair 1.11
Mean z-score -2.12
Structure conservation index 0.62
SVM decision value 1.36
SVM RNA-class probability 0.946407
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8105063 98 - 27905053
CCAAAUUGUGGCCACCGCACUUUGCACUUCCCCGCCCA------C-CUCUUGCCAAC--GAAAUG------------UAUGAGUG-GAGUGGGUGGGCGCAGGGCGUAACGGGCCACGGA
.....((((((((...((.((((((.((..((((((((------(-.((.(((....--.....)------------)).)))))-).)))))..)).)))))).))....)))))))). ( -44.60)
>DroSec_CAF1 56800 105 - 1
CCAAAUUGUGGCCACCGCACUUUGCACUUCACCGCCCCCUCACCC-CUCUUGACAAA--GAAAUG------------UGUGAUUGGGAGUGGGUGGGCGCAAGGCGUAACGGGCCACGGA
.....((((((((...((.((((((........((((.(((((((-(...(.(((.(--....).------------))).)..))).))))).)))))))))).))....)))))))). ( -44.20)
>DroSim_CAF1 28891 106 - 1
CCAAAUUGUGGCCACCGCACUUUGCACUUCCCCCGCCCCUCACCCUCUCUUGCCAAA--GAAAUG------------UGUGAUUGGGAGUGGGUGGGCGCAGGGCGUAACGGGCCACGGA
.....((((((((...((.((((((...(((((((((((((((.(..((((....))--))...)------------.))))..))).))))).))).)))))).))....)))))))). ( -45.40)
>DroEre_CAF1 31772 103 - 1
CCAAAUUGUGGCCACCGCACUUUGCACUCCCCCGCCCC--------CUUUUGGCCCU--GAGCUGGG----AGUGGGAGUGGAUGGGCGCAG---GGCGCAGGGCGUAACGGGCCACGGA
.....((((((((.((((.((((((.(((..(((((((--------((((..((...--..))..))----)).))).))))..))).))))---)).)).)).((...)))))))))). ( -50.20)
>DroYak_CAF1 25279 111 - 1
CCAAAUUGUGGCCACCGCACUUUGCACUCCCCCGCCCC--------CUUUUGUCCCGGUGAG-UGGGCGCUGGUGGGCGUGGGUGGGCGUAGGUGGGCGCAGGGCGUAACGGGCCACGGA
.....((((((((.((((.((.(((.(..(((((((((--------(...((((((.....)-.)))))..)).))))).)))..)))).))))))((((...))))....)))))))). ( -55.70)
>consensus
CCAAAUUGUGGCCACCGCACUUUGCACUUCCCCGCCCC______C_CUCUUGCCAAA__GAAAUG____________UGUGAGUGGGAGUGGGUGGGCGCAGGGCGUAACGGGCCACGGA
.....((((((((...((.((((((.(((.((((((((..............................................))).))))).))).)))))).))....)))))))). (-29.65 = -31.05 +   1.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:26 2006