Locus 3070

Sequence ID 3R_DroMel_CAF1
Location 8,104,115 – 8,104,228
Length 113
Max. P 0.626421
window4985

overview

Window 5

Location 8,104,115 – 8,104,228
Length 113
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 90.71
Mean single sequence MFE -20.70
Consensus MFE -18.86
Energy contribution -19.05
Covariance contribution 0.19
Combinations/Pair 1.10
Mean z-score -1.38
Structure conservation index 0.91
SVM decision value 0.19
SVM RNA-class probability 0.626421
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8104115 113 + 27905053
UCUGGCCAACAGUAGUUGCACGUACAGCUUUUUCCGCCCAGCUGGGUCCACUUUCCACUUUUUACUCCCCACUUUUCCCCCGAGGACCAUCCUCUUUCAAUGAACUGUCCAAA
..(((...(((((.((((...((((((((..........)))))((........))......)))................((((.....))))...))))..)))))))).. ( -20.90)
>DroSec_CAF1 55877 113 + 1
UCUGGCCAACAGUAGUUCCACGUACAGCUUUUUCCGCCCAGCUGGGCCCACUUUCCACUUUCCACUCCCCACCUUUCCCCCGAGGACCACCCUCUUUCAAUGAACUGUCCAAA
.(((.....)))((((((.................((((....))))..................................((((.....)))).......))))))...... ( -19.30)
>DroSim_CAF1 27941 113 + 1
UCUGGCCAACAGUAGUUGCACGUACAGCUUUUUCCGCCCAGCUGGGCCCACUUUCCACUUUCCACUCCCCACCUUUCCCCCGAGGACCACCCUCUUUCAAUGAACUGUCCAAA
..(((...((((((((((......)))))......((((....))))..................................((((.....)))).........)))))))).. ( -21.50)
>DroYak_CAF1 24330 105 + 1
UCUGGCCAACUGUAGUUGCACGUACAGCUUUUUCCGCCCAGCUGGGCCCACUUUCCACUCCCCA--------CUCUCCCCCGGGGACCACCCCCUUUCAAUGAACUGUCCCAA
..(((.((((....)))).....((((........((((....))))...........(((((.--------.........)))))..................)))).))). ( -21.10)
>consensus
UCUGGCCAACAGUAGUUGCACGUACAGCUUUUUCCGCCCAGCUGGGCCCACUUUCCACUUUCCACUCCCCACCUUUCCCCCGAGGACCACCCUCUUUCAAUGAACUGUCCAAA
..(((...((((((((((......)))))......((((....))))..................................((((.....)))).........)))))))).. (-18.86 = -19.05 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:52:21 2006