Locus 3062

Sequence ID 3R_DroMel_CAF1
Location 8,099,401 – 8,099,521
Length 120
Max. P 0.700114
window4959

overview

Window 9

Location 8,099,401 – 8,099,521
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.17
Mean single sequence MFE -30.56
Consensus MFE -25.24
Energy contribution -26.76
Covariance contribution 1.52
Combinations/Pair 1.10
Mean z-score -1.44
Structure conservation index 0.83
SVM decision value 0.35
SVM RNA-class probability 0.700114
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8099401 120 + 27905053
AUGCCUAUGGCCCACAAAAUCCCUAAUUGUAAUUAAGCAUGGGAAUCCUCAACGGUAGAACUUGGGAAUCCGAGCCCGAGUAACCGAAAAAUGUGGCCAAUAAAAUUACUAUGAGCGUGG
.......(((((.(((...((((....(((......))).))))........((((...(((((((........))))))).)))).....)))))))).........((((....)))) ( -33.30)
>DroSec_CAF1 51046 120 + 1
AUGCGUAUGGCCCACAAAAUCCCUAAUUGUAAUUAAGCAUGGGAAUCCUCAACGGUAGAACUUGGGAAUCCGAGCCCGAGUAACCGAAAAAUGUGGCCAAUAAAAUUACUAUGAGCGUGG
..((((.(((((.(((...((((....(((......))).))))........((((...(((((((........))))))).)))).....))))))))(((.......)))..)))).. ( -33.90)
>DroSim_CAF1 23117 120 + 1
AUGCGUAUGGCCCACAAAAUCCCUAAUUGUAAUUAAGCAUGGGAAUCCUCAACGGUAGAACUUGGGAAUCCGAGCCCGAGUAACCGAAAAAUGUGGCCAAUAAAAUUACUAUGAGCGUGG
..((((.(((((.(((...((((....(((......))).))))........((((...(((((((........))))))).)))).....))))))))(((.......)))..)))).. ( -33.90)
>DroEre_CAF1 26097 120 + 1
AUGCGUAUGGCCCACAAAAUCCCUAAUUGUAAUUAAGCAUGGGAAUCCUCAACAGCAGCACUUGGGAAUCCGAGCCCGAGUAACCGAAAAAUGUGGCCAAUAAAAUUACUACGAGUGUGG
.......(((((.(((...((((....(((......))).))))...............(((((((........)))))))..........)))))))).........((((....)))) ( -29.10)
>DroYak_CAF1 19471 107 + 1
AUGCGUAUGGCCCACAAAAUCCCUAAUUGUAAUUAAGCAUGGGAAUCUUCAACAGCAGAACUUGGGAAUCCGAGCUCGGGUA-------------GCCAAUAAAAUUACUAUGAGUGUGG
..((.....))(((((...((((....(((......))).)))).................((((..(((((....))))).-------------.))))...............))))) ( -22.60)
>consensus
AUGCGUAUGGCCCACAAAAUCCCUAAUUGUAAUUAAGCAUGGGAAUCCUCAACGGUAGAACUUGGGAAUCCGAGCCCGAGUAACCGAAAAAUGUGGCCAAUAAAAUUACUAUGAGCGUGG
.......(((((.(((...((((....(((......))).))))........((((...(((((((........))))))).)))).....)))))))).........((((....)))) (-25.24 = -26.76 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:57 2006