| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,184,750 – 1,184,840 |
| Length | 90 |
| Max. P | 0.935243 |
| Location | 1,184,750 – 1,184,840 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 92.22 |
| Mean single sequence MFE | -18.16 |
| Consensus MFE | -16.04 |
| Energy contribution | -15.97 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.935243 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1184750 90 + 27905053 AUGCUAAAAACAAUGACGGGGAGACCCGCUCUUUAACACGAUACAUAUACGAAUAAGGAUACCCUACGCAAAACUAAGAGCUACAUGUCA .............(((((((....)))((((((.....((.........))....(((....)))..........)))))).....)))) ( -20.10) >DroSim_CAF1 3212 90 + 1 AUGCUAAAAACAAUGACGGGGAAACCCGCUCUUUAACACGAUACAUAUACGAAUAAGGAUACCCUACGCAAAACUAAGAGCUACAUGUCA .............(((((((....)))((((((.....((.........))....(((....)))..........)))))).....)))) ( -20.10) >DroEre_CAF1 3392 90 + 1 AUGCUAAAAACAAUGACGGGGAUUUCCGCUCUUUAACACGGGUCAUAUACGAACAAGAAUACCCUACGCAAAACUAAGAGCUACAUGUCA .............(((((.((....))((((((......((((.................))))...........))))))....))))) ( -13.96) >DroYak_CAF1 3591 90 + 1 AUGCUACAAACAAUGACAGGGAGACCCGCUCUUUAAUAUGGUACAUAUACAAAUAAGGAUACCCUACGCAAAACUAAGAGCUACAUGUCA .............(((((((....)).((((((..(((((...))))).......(((....)))..........))))))....))))) ( -18.50) >consensus AUGCUAAAAACAAUGACGGGGAGACCCGCUCUUUAACACGAUACAUAUACGAAUAAGGAUACCCUACGCAAAACUAAGAGCUACAUGUCA .............(((((((....)))((((((.....((.........))....(((....)))..........)))))).....)))) (-16.04 = -15.97 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:58 2006