| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,095,643 – 8,095,760 |
| Length | 117 |
| Max. P | 0.585363 |
| Location | 8,095,643 – 8,095,760 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.20 |
| Mean single sequence MFE | -35.18 |
| Consensus MFE | -27.68 |
| Energy contribution | -27.56 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.585363 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8095643 117 + 27905053 AAAUCGAAAUCAGAAUGGGGCUGGAACUGGGAGGCGGACAAUGGGAAACGAUACUGAUACCGAGUCGAUCGAUCGACGCUUCCCCUUGGCAGACA---AACUGAUUUAUGGCAAUGCAAA ...((((((((((..((..((..(....(((((((((.((((.(....).))..))...))..(((((....)))))))))))).)..))...))---..))))))).)))......... ( -34.30) >DroSec_CAF1 47322 116 + 1 AAAUCAAAAUCAGAAUGGGGCUGGAACUGGGAGGCGGACAAUGGGA-ACGAUACUGAUACCGAGUAGAUCGAUCGACGCUUCCCCUUGGCAGACA---AACUGAUUUAUGGCAAUGCAAA ...((((((((((..((..((..(....((((((((..(....)((-.((((.(((........))))))).))..)))))))).)..))...))---..))))))).)))......... ( -30.90) >DroSim_CAF1 19378 116 + 1 AAAUCGAAAUCAGAAUGGGGCUGGAACUGGGAGGCGGACAAUGGGA-ACGAUACUGAUACCGAGUCGAUCGAUCGACGCUUCCCCUUGGCAGACA---AACUGAUUUAUGGCAAUGCAAA ...((((((((((..((..((..(....(((((((......(((..-............))).(((((....)))))))))))).)..))...))---..))))))).)))......... ( -32.34) >DroEre_CAF1 22375 119 + 1 AAAUCGAAAUCAGAAUGGGGCUGGAACUGGGAGGCGGACAAUGAGA-GUGAUACUGAUACCGAGUCGAUCGAUCGACGCUUCCCCUUGGCAGUCCCCCCACUGAUUUAUGGCAAUGCAAA ...((((((((((...(((((((..(..(((((((((...((.(((-....).)).)).))..(((((....))))))))))))..)..)))))))....))))))).)))......... ( -39.40) >DroYak_CAF1 15880 111 + 1 -----GAAAUCAGAAUGGGGCUGGAACUGGGAGGCGGACAAUGGGA-AUGAUACUGAUACCGAGUCGAUCGAUCGACGCUUCCUCUUGGCAGUCC---CACUGAUUUAUGGCAAUGCAAA -----.(((((((..((((((((..(..(((((((......(((..-............))).(((((....))))))))))))..)..))))))---)))))))))............. ( -38.94) >consensus AAAUCGAAAUCAGAAUGGGGCUGGAACUGGGAGGCGGACAAUGGGA_ACGAUACUGAUACCGAGUCGAUCGAUCGACGCUUCCCCUUGGCAGACA___AACUGAUUUAUGGCAAUGCAAA ......(((((((......((((..(..(((((((((...((.((........)).)).))..(((((....))))))))))))..)..))).)......)))))))............. (-27.68 = -27.56 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:45 2006