Locus 3056

Sequence ID 3R_DroMel_CAF1
Location 8,095,244 – 8,095,350
Length 106
Max. P 0.698064
window4946

overview

Window 6

Location 8,095,244 – 8,095,350
Length 106
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.37
Mean single sequence MFE -36.40
Consensus MFE -23.60
Energy contribution -23.80
Covariance contribution 0.20
Combinations/Pair 1.08
Mean z-score -2.52
Structure conservation index 0.65
SVM decision value 0.34
SVM RNA-class probability 0.698064
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8095244 106 + 27905053
UACAGAU--GCAGCUUCGGUCUGAGAUCGAAUUGAAGA------------UGCAGAUGCAGAUUCAGUUGCAGAUACAGUUGCAAAUGUGCAGCUGCCAGCGAUCGAAGUGGCGCGAUCA
....(((--((.(((((((((....(((.(((((((..------------(((....)))..)))))))...))).((((((((....)))))))).....)))))))))...)).))). ( -39.30)
>DroSec_CAF1 46936 106 + 1
UACAGAU--GCAGCAUCGGUCUGAGAUCGAAUUGAAGA------------UGCAGAUGCAGAUUCAGUUGCAGAUACAGUUGCAAAUGUGCAGCUGCCAGCGAUCGAAGUGGCGCGAUCA
......(--(((((.((((((...))))))..((((..------------(((....)))..))))))))))....((((((((....)))))))).....(((((........))))). ( -37.40)
>DroSim_CAF1 18972 106 + 1
UACAGAU--GCAGCAGCGGUCUGAGAUCGAAUUGAAGA------------UGCAGAUGCAGAUUCAGUUGCAGAUACAGUUGCAAAUGUGCAGCUGCCAGCGAUCGAAGUGGCGCGAUCA
..(((((--((....)).))))).((((.(((((((..------------(((....)))..)))))))((......(((((((....)))))))((((.(.......))))))))))). ( -37.70)
>DroEre_CAF1 21958 112 + 1
UGCAGA--------UUUGGUCUCAGACCGAAGUGAAGAUGCCGAUGGAGAUGCAGAUGGAGAUGCAGUUGCAGAUACAGUUGCAAAUGUGCAGCUGCCAGCGAUCGAAGUGGCGCGAUCA
.((...--------(((((((...)))))))........((((.....(((((...(((...(((....)))....((((((((....))))))))))))).)))....))))))..... ( -33.70)
>DroYak_CAF1 15502 108 + 1
UGCAGAUUUACAGAUUUAGUCUGAGAUCGAACUGAAGA------------UGCAGAUGGAGAUUCAGUUGCAGAUACAGUUGCAAAUGUGCAGCUGCCAGCGAUCGAAGUGGCGCAAUCA
(((.(((((.(((((...)))))))))).(((((((..------------(.(....).)..))))))))))(((.((((((((....))))))))...(((.((.....))))).))). ( -33.90)
>consensus
UACAGAU__GCAGCUUCGGUCUGAGAUCGAAUUGAAGA____________UGCAGAUGCAGAUUCAGUUGCAGAUACAGUUGCAAAUGUGCAGCUGCCAGCGAUCGAAGUGGCGCGAUCA
...............((((((...(((((.....................(((((.((......)).)))))....((((((((....))))))))....))))).....))).)))... (-23.60 = -23.80 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:44 2006