Locus 3055

Sequence ID 3R_DroMel_CAF1
Location 8,094,943 – 8,095,054
Length 111
Max. P 0.686376
window4945

overview

Window 5

Location 8,094,943 – 8,095,054
Length 111
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 87.80
Mean single sequence MFE -32.40
Consensus MFE -21.12
Energy contribution -22.74
Covariance contribution 1.62
Combinations/Pair 1.16
Mean z-score -2.26
Structure conservation index 0.65
SVM decision value 0.32
SVM RNA-class probability 0.686376
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8094943 111 - 27905053
AGUCUGCCAAAUGGCAGUGAGCUGCAGUUUAGGGUUGGGUUU--GGAGCUGGAAAGCAAGGCAAGUCUCAAUUAGGACCAAUCUGAACCCUAUAAUUAAUUUACAUAUAAUUG
((((((((....)))))...)))..(((((((((((.((.((--((.(((....)))........(((......))))))).)).))))))).))))................ ( -30.80)
>DroSec_CAF1 46643 101 - 1
AGUUUGCCAAAUGGCAGUGAGUUGCAGUUUAGGGUUGGGUUU--G----------GCAAGGCAAGUCUCAAUUAGGCCCAACCUGAACUCCAUAAUUAAUUUACAUAUAAUUG
....((((....))))((((((((.((((((((.((((((((--(----------(..(((....)))...)))))))))))))))))).))......))))))......... ( -31.30)
>DroSim_CAF1 18667 113 - 1
AGUUUGCCAAAUGGCAGUGAGUUGCAGUUUAGGGUUGGGUCUUUGGAGCUGGAACGCAAGGCAAGUCUCAAUUAGGCCCAACCUGAACUCCAUAAUUAAUUUACAUAUAAUUG
....((((....))))((((((((.((((((((.(((((((((((..(((....(....)...)))..)))..)))))))))))))))).))......))))))......... ( -39.80)
>DroEre_CAF1 21657 111 - 1
AGUUUGCCAAAUGGCAGUGAGCUGCAGUUUAGGGCUGGGCUU--GAAGCUGAAUGGUAAGGUAAGUCUCAAUUAGGGCCAACCUGAACCCCAUAAUUAAUUUACAUAUAAUUG
..(((((((..((((..((((((.((((.....)))))))))--)..))))..)))))))((((((...((((((((...........))).))))).))))))......... ( -27.70)
>consensus
AGUUUGCCAAAUGGCAGUGAGCUGCAGUUUAGGGUUGGGUUU__GGAGCUGGAA_GCAAGGCAAGUCUCAAUUAGGCCCAACCUGAACCCCAUAAUUAAUUUACAUAUAAUUG
....((((....))))((((((((.((((((((.((((((((..((..((.............))..))....)))))))))))))))).))......))))))......... (-21.12 = -22.74 +   1.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:43 2006