Locus 3053

Sequence ID 3R_DroMel_CAF1
Location 8,094,584 – 8,094,704
Length 120
Max. P 0.638114
window4942

overview

Window 2

Location 8,094,584 – 8,094,704
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.82
Mean single sequence MFE -35.60
Consensus MFE -30.06
Energy contribution -29.42
Covariance contribution -0.64
Combinations/Pair 1.10
Mean z-score -1.42
Structure conservation index 0.84
SVM decision value 0.22
SVM RNA-class probability 0.638114
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8094584 120 + 27905053
UUAAAUCAUAUUGGAUGUCAGUCAAAUCGCUGGUGACAUUCCCAAAUUAGAAGAAGUCGGUGGGGCGGCAACUUUAUUGCGUGGUGAUUGCCACGGCCAUUGUUUCGAUGACACGCCAAA
............((((((((.(((......))))))))))).................((((.((((....).......((((((....)))))))))..((((.....))))))))... ( -32.60)
>DroSec_CAF1 46294 120 + 1
UUAAAUCAUAUUGGACGUCAGUCAAAUCCCUGGUGACAUUCCCAAAUUAGAAGAAGUCGGUGGGGCGGCAACUUCAUUGCGUGGUGAUUGCCACGGCCAUUGUUUUGAUGACACGCCAAA
..........((((.(((..((((((.(((((.((((.(((........)))...)))).))))).(((..(......)((((((....))))))))).....))))))...))))))). ( -36.00)
>DroSim_CAF1 18315 120 + 1
UUAAAUCAUAUUGGACGUCAGUCAAAUCGCUGGUGACAUUCCCAAAUUAGAAGAAGUCGGUGGGGCGGCAACUUCAUUGCGUGGUGAUUGCCACGGCCAUUGUUUCGAUGACACGCCAAA
..........((((.(((..((((..((..((....))..............((((.((((((((.(....).))....((((((....)))))).))))))))))))))))))))))). ( -33.20)
>DroEre_CAF1 21304 117 + 1
UUAAAUCAUAUUGGACGUCAGUCAAAGC---AGUGACAUUCCCAAAUUAGAAAAAGUCGGUGGGGCGGCAACUUCAUUGCGUGGUGAUUGCCACGGCCAUUGUUUUGAUGACACGCCAAA
..........((((.(((..((((((((---((((.....((((.....((.....))..))))(((....).......((((((....))))))))))))))))))))...))))))). ( -38.50)
>DroYak_CAF1 14836 117 + 1
UUAAAUCAUAUUGGACGUCAGUCAAAGC---GGUGACAUUCCCAAAUUAGAAAAAGUCGGUGGGGCGGCAACUUCAUUGCGUGGUGAUUGCCACGGCCAUUGUUUUGAUGACACGCCAAA
..........((((.(((..((((((((---((((.....((((.....((.....))..))))(((....).......((((((....))))))))))))))))))))...))))))). ( -37.70)
>consensus
UUAAAUCAUAUUGGACGUCAGUCAAAUC_CUGGUGACAUUCCCAAAUUAGAAGAAGUCGGUGGGGCGGCAACUUCAUUGCGUGGUGAUUGCCACGGCCAUUGUUUUGAUGACACGCCAAA
..........((((..((((((((.........))))...............((((.((((((((.(....).))....((((((....)))))).))))))))))..))))...)))). (-30.06 = -29.42 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:41 2006