Locus 3045

Sequence ID 3R_DroMel_CAF1
Location 8,089,866 – 8,089,986
Length 120
Max. P 0.941014
window4920

overview

Window 0

Location 8,089,866 – 8,089,986
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.73
Mean single sequence MFE -34.51
Consensus MFE -27.42
Energy contribution -29.66
Covariance contribution 2.24
Combinations/Pair 1.03
Mean z-score -2.12
Structure conservation index 0.79
SVM decision value 1.31
SVM RNA-class probability 0.941014
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8089866 120 + 27905053
GCACAUCUAUUGAUCUCGGCCCCAAUGAAUGGAACGAGCUAAUCCCUGCCAUAUGCGUUCCUUCUUAGCCCCGAUCCGUCAUAGGGCACAAUCGGAGGUGUCACAAUUUUUGACACUUCA
..........((((....((((..((((.((((.((.(((((....(((.....))).......)))))..)).)))))))).))))...))))(((((((((.......))))))))). ( -34.40)
>DroSec_CAF1 41671 120 + 1
GCACAUCUAUUGAUCUGGGCCCCAAUGAAUGGAAGCAGCUAAUCCCUGCCAUAUGCGUUCCUUCUUAGCCCCGAUCCGUCAUAGGGCACAAUCGUAGGUGUCACAAUUUUUGACACUUCA
((...(((((.((((.((((......(((.(((((((((........))....))).)))))))...)))).))))....)))))))......(.((((((((.......))))))))). ( -32.00)
>DroSim_CAF1 13558 120 + 1
GCACAUCUAUUGAACUGGGCUCCAAUGAAUGGAAACAGCUAAUCCCUGCCAUAUGCGUUCCUUCUUAGCCCCGAUCCGUCAUAGGGCACAAUCGUAAGUGUCACAAUUUUUGACACUUCA
((............(.(((((.....(((.((((...((...............)).)))))))..))))).)..((......))))......(.((((((((.......))))))))). ( -27.66)
>DroEre_CAF1 16637 117 + 1
GCACA---AUUGAUCUGGGCUCCAUUCAAUGGAACGAGCUAAUCCCCGCCAUAUGCGUUCCUUCUUAGCCCCGAUCCGUCAUGGGGCACAAUCGGAGGUGUCACAAUUUUUGACACUUCA
.....---..((((.((.(((((((...(((((.((.(((((....(((.....))).......)))))..)).))))).))))))).))))))(((((((((.......))))))))). ( -37.70)
>DroYak_CAF1 10035 117 + 1
GCACC---AUGGAUCCGGGAUCCAAUGAAUGGAACGAGCUAAUCCCUGCCAUAUGCGUUCCUUCUUAGCCCCGAUCCGUCAUAGGGCACAAUCGGAGGUGUCACAAUUUUUGACACUUCA
((.((---(((((((.(((.......(((.((((((.((........))......)))))))))....))).)))))))....)))).......(((((((((.......))))))))). ( -40.80)
>consensus
GCACAUCUAUUGAUCUGGGCUCCAAUGAAUGGAACGAGCUAAUCCCUGCCAUAUGCGUUCCUUCUUAGCCCCGAUCCGUCAUAGGGCACAAUCGGAGGUGUCACAAUUUUUGACACUUCA
((......((.((((.(((((.....(((.((((((.((........))......)))))))))..))))).)))).))......)).......(((((((((.......))))))))). (-27.42 = -29.66 +   2.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:20 2006