Locus 3044

Sequence ID 3R_DroMel_CAF1
Location 8,089,403 – 8,089,523
Length 120
Max. P 0.831664
window4919

overview

Window 9

Location 8,089,403 – 8,089,523
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.83
Mean single sequence MFE -28.90
Consensus MFE -28.32
Energy contribution -28.00
Covariance contribution -0.32
Combinations/Pair 1.06
Mean z-score -1.29
Structure conservation index 0.98
SVM decision value 0.72
SVM RNA-class probability 0.831664
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8089403 120 - 27905053
GUGCGAGUGUUAUGUUGUGUAAGGGAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAAUAAAAGAGGAACAACCCGAGCCAAU
(((....(((.(((((((((((.((((.((.......)).))))(..(((((((.....)))))))..)..))))))))))).)))....))).........((......))........ ( -27.90)
>DroSec_CAF1 41230 120 - 1
GUGCGAGUGUUAUGUUGUGUAAGGGAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAAUAAAAGAGGAACAACCCGAGCCAAU
(((....(((.(((((((((((.((((.((.......)).))))(..(((((((.....)))))))..)..))))))))))).)))....))).........((......))........ ( -27.90)
>DroSim_CAF1 13096 120 - 1
GUGCGAGUGUUAUGUUAUGUAAGGGAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAAUAAAAGAGGAACAACCCGAGCCAAU
(((....(((.(((((((((((.((((.((.......)).))))(..(((((((.....)))))))..)..))))))))))).)))....))).........((......))........ ( -27.90)
>DroEre_CAF1 16175 120 - 1
GUGCGAGUGUUAUGUUGUGUAAGGGAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAAUACAGGAGGAACAGCCCGAGCCAAU
(((....(((.(((((((((((.((((.((.......)).))))(..(((((((.....)))))))..)..))))))))))).)))....)))......((.((......))...))... ( -30.70)
>DroYak_CAF1 9581 120 - 1
GUGCGAGUGUUGUGUUGUGUAAGGGAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAAUAAAAGCGGAACAGCCCGAGCCAAU
(((....(((.(((((((((((.((((.((.......)).))))(..(((((((.....)))))))..)..))))))))))).)))....)))........(((......)))....... ( -30.10)
>consensus
GUGCGAGUGUUAUGUUGUGUAAGGGAGCGACAAAGAUUCAUUCCGUGUCAUCAGUCAACUUGAUGGUGUAAUUAUAUAGCAUUACAAAAACACAAUAAAAGAGGAACAACCCGAGCCAAU
(((....(((.(((((((((((.((((.((.......)).))))(..(((((((.....)))))))..)..))))))))))).)))....))).........((......))........ (-28.32 = -28.00 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:19 2006