Locus 3042

Sequence ID 3R_DroMel_CAF1
Location 8,088,490 – 8,088,591
Length 101
Max. P 0.841560
window4917

overview

Window 7

Location 8,088,490 – 8,088,591
Length 101
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 77.59
Mean single sequence MFE -31.96
Consensus MFE -23.64
Energy contribution -24.36
Covariance contribution 0.72
Combinations/Pair 1.17
Mean z-score -1.60
Structure conservation index 0.74
SVM decision value 0.75
SVM RNA-class probability 0.841560
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8088490 101 + 27905053
UCUUUUUGUUCGGUAGCCUCGACAAAGGGGUCAAUUCGAAAGGGCAACAGUUGAUGUUCAGGGCGCAUGAGUUGCGUCCUGAAAUUGGGUGGCCAUUUUGU-------------------
(((((((((.(((.....))))))))))))......(((((.(((..((.(..((.(((((((((((.....)))))))))))))..).))))).))))).------------------- ( -37.90)
>DroSec_CAF1 13364 118 + 1
UCUUUUUGUUCGAUGGCCUCGACAAAGGGGUCAAUUCAAAAGGGCAACAGUUGAUGGUCAGGGCGCUUGG-UGGNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
.......(((((((((((((......))))))...((((...(....)..))))..))).))))......-..............-.................................. ( -18.20)
>DroSim_CAF1 12184 100 + 1
UCUUUUUGUUCGAUGGCCUCGACAAAGGGGUCAAUUCGAAAGGGCAACAGUUGAUGUUCAGGGCGCAUGAGUUGAGUCCUGAAAU-GGGUGGCCAUUUUGU-------------------
........((((((((((((......)))))))..)))))..(((.((........((((((((.((.....)).))))))))..-..)).))).......------------------- ( -33.40)
>DroEre_CAF1 15198 100 + 1
UCUUUUUGUUCGGUGGCCCCGGCAAAGGGGUCAAUUCGAAAGGGCAACAGUUGAUGUUCAGGGCGCAUGAGUUGAGUCCUGAAAU-GGGUGGCCAUUUUGU-------------------
........((((((((((((......)))))))..)))))..(((.((........((((((((.((.....)).))))))))..-..)).))).......------------------- ( -35.50)
>DroYak_CAF1 8552 100 + 1
UCUUUUUGUUCGGUGGCCCCGACAAAGGGGUCAGUUUGAAAGGGCAACAGUUGAUGUUCAGGGCGCAUGAGUUGAGUCCUGACAU-GGGUGGCCAUUUUGU-------------------
.(((((.....(.(((((((......))))))).)..)))))(((.((...(.((((.((((((.((.....)).))))))))))-.))).))).......------------------- ( -34.80)
>consensus
UCUUUUUGUUCGGUGGCCUCGACAAAGGGGUCAAUUCGAAAGGGCAACAGUUGAUGUUCAGGGCGCAUGAGUUGAGUCCUGAAAU_GGGUGGCCAUUUUGU___________________
((((((((.....(((((((......)))))))...)))))))).............(((((((.((.....)).)))))))...................................... (-23.64 = -24.36 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:51:17 2006