| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 1,156,585 – 1,156,693 |
| Length | 108 |
| Max. P | 0.867696 |
| Location | 1,156,585 – 1,156,693 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 74.43 |
| Mean single sequence MFE | -23.21 |
| Consensus MFE | -14.61 |
| Energy contribution | -14.62 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.867696 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1156585 108 + 27905053 CAGCUGCAAGUGAAAGUCAAACAUGAAACGCUU-UGGACUCCGCCACAC-ACACACUUGCAAUUUCGGCCAGGAGCACACAUGCACACACAUGUGCACACACAUGGCCAC ....(((((((((((((............))))-)((......))....-...)))))))).....(((((.(.(..((((((......))))))..).)...))))).. ( -30.40) >DroEre_CAF1 90270 85 + 1 CAACUGCAAGUGAAAGUCAAACACGAAACGCUUUUGGACUCCGCCACACA---ACCCUGCAC--UCGGCCAGAAGCAC--------------------ACACAUGGGCAC ....(((..(((....((......))...((((((((...(((...((..---....))...--.)))))))))))..--------------------...)))..))). ( -17.50) >DroYak_CAF1 118357 85 + 1 CAGCUGCAAGUGAAAGUCAAACAUGAAAUGCUUCUGGACUCCGCCACACA---CUCUCGCAC--UCGGCCAGAAGCAC--------------------ACACGUGGGCAC ..(((.((.(((....(((....)))..(((((((((...(((.......---.........--.)))))))))))).--------------------.))).))))).. ( -21.73) >consensus CAGCUGCAAGUGAAAGUCAAACAUGAAACGCUU_UGGACUCCGCCACACA___CACUUGCAC__UCGGCCAGAAGCAC____________________ACACAUGGGCAC ......((.(((....((......))...((((((((...(((......................))))))))))).......................))).))..... (-14.61 = -14.62 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:55 2006