Locus 3036

Sequence ID 3R_DroMel_CAF1
Location 8,084,702 – 8,084,816
Length 114
Max. P 0.819871
window4888

overview

Window 8

Location 8,084,702 – 8,084,816
Length 114
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.70
Mean single sequence MFE -35.16
Consensus MFE -32.98
Energy contribution -33.42
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.25
Structure conservation index 0.94
SVM decision value 0.68
SVM RNA-class probability 0.819871
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8084702 114 + 27905053
------CCAGUGUCGUUGCAGACAGUUGUUGAUAAGAAGCAUUUUGUUUCUACGAGUGCCUGAUAAGCGCCAUUUGAGAGAGCGACUGAGGCGAGGUCAAUUGACCUGCUUUUAAGCAGA
------.(((((.(.((((...((((((((....((((((.....)))))).(((((((((....)).).))))))....))))))))..)))).).).))))..(((((....))))). ( -35.00)
>DroSec_CAF1 9628 114 + 1
------CCAGUGUCGUUGCAGACAGUUGUUGAUAAGAAGCAUUUCGUUUCUACGAGUGCCUGAUAAGCGCCAUUUGAGAGAGCGACUGAGGCGAGGUCAAUUGACCUGCUUUUAAGCAGA
------.(((((.(.((((...((((((((....((((((.....)))))).(((((((((....)).).))))))....))))))))..)))).).).))))..(((((....))))). ( -34.70)
>DroSim_CAF1 8461 117 + 1
AGAGACCCAGUGUCG-UGCAGACAGUUGUUGAUAAGAAGCAUUUCGUUUCUACGAGUGCCUGAUAAGCGCCAU-UGAGAGAGCGACUGAGGCGAGGUCAAUUGAC-UGCUUUUAAGCAGA
...(((((((((.((-(.(((.((.((((.....((((((.....)))))))))).)).)))....))).)))-)).....((.......))..))))......(-((((....))))). ( -34.10)
>DroEre_CAF1 11389 114 + 1
------CCAGCGUCGUUGCAGACAGUUGUUGAUAAGAAGCAUUUUGUUUCUACGAGUGCCUGAUAAGCGCCAUUCGAGAGAGCGACUGAGGCGAGGUCAAUUGACCUGCUUUUAAGCAGA
------.........((((...((((((((....((((((.....)))))).(((((((((....)).).))))))....))))))))((((.(((((....)))))))))....)))). ( -37.00)
>DroYak_CAF1 4733 114 + 1
------CCAGUGUCGUUGCAGACAGUUGUUGAUAAGAAGCAUUUUGUUUCUACGAGUGCCUGAUAAGCGCCAUUUGAGAGAGCGACUGAGGCGAGGUCAAUUGACCUGCUUUUAAGCAGA
------.(((((.(.((((...((((((((....((((((.....)))))).(((((((((....)).).))))))....))))))))..)))).).).))))..(((((....))))). ( -35.00)
>consensus
______CCAGUGUCGUUGCAGACAGUUGUUGAUAAGAAGCAUUUUGUUUCUACGAGUGCCUGAUAAGCGCCAUUUGAGAGAGCGACUGAGGCGAGGUCAAUUGACCUGCUUUUAAGCAGA
...............((((...((((((((....((((((.....)))))).(((((((((....)).).))))))....))))))))((((.(((((....)))))))))....)))). (-32.98 = -33.42 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:49 2006