Locus 3034

Sequence ID 3R_DroMel_CAF1
Location 8,083,038 – 8,083,158
Length 120
Max. P 0.738727
window4882

overview

Window 2

Location 8,083,038 – 8,083,158
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 97.00
Mean single sequence MFE -36.14
Consensus MFE -35.02
Energy contribution -35.14
Covariance contribution 0.12
Combinations/Pair 1.09
Mean z-score -1.18
Structure conservation index 0.97
SVM decision value 0.44
SVM RNA-class probability 0.738727
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8083038 120 - 27905053
UGCUCAUUAAUAACGUCAUCCUUAACGGACGAUGGCUGCAGGAUCGGAAGCGAUGUCCUUCCUGGGCAGGACAAACACACACGGACAGCUAUGGCGAAAGAUGGAAUCGAUGAGAAUGCA
..(((((..((..((((.(((.....)))(.((((((((...((((....))))(((((.(....).)))))...........).))))))).).....))))..))..)))))...... ( -36.90)
>DroSec_CAF1 7953 120 - 1
UGCUCAUUAAUAACGUCAUCCUUAACGGACGAUGGCUGCAGGAUCGGAAGCGAUGUCCCUCCUGGGCAGGACAAACACACACGGACAGCUAUGGCGAAAGAUGGAAUCGAUGAGAAUGCA
..(((((..((..((((.(((.....)))(.((((((((...((((....))))((((..(....)..))))...........).))))))).).....))))..))..)))))...... ( -34.80)
>DroSim_CAF1 6407 120 - 1
UGCUCAUUAAUAACGUCAUCCUUAAAGGACGAUGGCUGCAGGAUCGGAAGCGAUGUCCCUCCUGGGCAGGACAAACACACACGGACAGCUAUGGCGAAAGAUGGAAUCGAUGAGAAUGCA
..(((((..((..((((.(((.....)))(.((((((((...((((....))))((((..(....)..))))...........).))))))).).....))))..))..)))))...... ( -35.10)
>DroEre_CAF1 9682 120 - 1
UGCUCAUUAAUAACGUCAUCCUUAACGGACGAUGGCUGCAGGAUCGGCAGCGAUGUCCUUCCUGGGCAGGACAAACACACAUGGACGGCUGUGGCGAAAGAUGGAAUCGAUGAGAAUGCA
..(((((..((..((((........((..(.((((((((.......)))))..((((((.(....).))))))......))))..))((....))....))))..))..)))))...... ( -36.90)
>DroYak_CAF1 3043 120 - 1
UGCUCAUUAAUAACGUCAUCCUUAACGGACGAUGGCUGCAGGAUCGGAAGCGAUGUCCUUCCUGGCCAGGACAAACACACAUGGACAGCUAUGGCGAAAGACGGAAUCGAUGAGAAUGCA
..(((((..((..((((.(((.....)))(.((((((((...((((....))))(((((........)))))...........).))))))).).....))))..))..)))))...... ( -37.00)
>consensus
UGCUCAUUAAUAACGUCAUCCUUAACGGACGAUGGCUGCAGGAUCGGAAGCGAUGUCCUUCCUGGGCAGGACAAACACACACGGACAGCUAUGGCGAAAGAUGGAAUCGAUGAGAAUGCA
..(((((..((..((((.(((.....)))(.((((((((...((((....))))(((((.(....).)))))...........).))))))).).....))))..))..)))))...... (-35.02 = -35.14 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:43 2006