Locus 3030

Sequence ID 3R_DroMel_CAF1
Location 8,079,574 – 8,079,692
Length 118
Max. P 0.953423
window4874

overview

Window 4

Location 8,079,574 – 8,079,692
Length 118
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.24
Mean single sequence MFE -26.78
Consensus MFE -23.84
Energy contribution -23.90
Covariance contribution 0.06
Combinations/Pair 1.04
Mean z-score -2.06
Structure conservation index 0.89
SVM decision value 1.43
SVM RNA-class probability 0.953423
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8079574 118 - 27905053
AAU--AUGUUUUGGGGAAUAUUACGAAACGCCAUGAAACUUUCCCACCAAAGUCAACUAAGCAUCCUGUCAUACUUCCCGCAGGAUGUGAUCUUUUGAUCCGGAAACUAUAAAAUUGGUA
...--..((((((..........))))))((((......(((((................(((((((((..........)))))))))((((....)))).))))).........)))). ( -26.86)
>DroSec_CAF1 4476 120 - 1
AAUAUAUGUUUUGGGGAAUAUUACGAAACGCCAUGAAACUUUCCCACCAAAGUCAACUAAGCAUCCUGUCAUACUUCCCGCAGGAUGUGAUCUUUUGAUCCGGAAACUAUAAAAUUUUUA
..((((.(((((((((((..(((.(......).)))...)))))))((............(((((((((..........)))))))))((((....)))).))))))))))......... ( -25.80)
>DroSim_CAF1 2924 118 - 1
AAU--AUGUUUUGGGGAAUAUUACGAAACGCCAUGAAACUUUCCCACCAAAGUCAACUAAGCAUCCUGUCAUACUUCCCGCAGGAUGUGAUCUUUUGAUCCGGAAACUAUAAAAUUGGUA
...--..((((((..........))))))((((......(((((................(((((((((..........)))))))))((((....)))).))))).........)))). ( -26.86)
>DroEre_CAF1 2985 99 - 1
ACA--AUGUUUUGGGGA-------------------AACUUUCCCACCAAAGUCAAAUAAGCAUCCUGUCAUAUUUCCCGCAGGAUGUGAUCUUUUGAUCCGGAAACUAUAAAACUGGUA
((.--..((((((((((-------------------.....)))).((...((((((...(((((((((..........))))))))).....))))))..))......))))))..)). ( -27.60)
>consensus
AAU__AUGUUUUGGGGAAUAUUACGAAACGCCAUGAAACUUUCCCACCAAAGUCAACUAAGCAUCCUGUCAUACUUCCCGCAGGAUGUGAUCUUUUGAUCCGGAAACUAUAAAAUUGGUA
.......(((((((((((......................))))).((............(((((((((..........)))))))))((((....)))).))......))))))..... (-23.84 = -23.90 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:35 2006