Locus 303

Sequence ID 3R_DroMel_CAF1
Location 1,152,951 – 1,153,043
Length 92
Max. P 0.571031
window513

overview

Window 3

Location 1,152,951 – 1,153,043
Length 92
Sequences 4
Columns 92
Reading direction forward
Mean pairwise identity 89.33
Mean single sequence MFE -11.03
Consensus MFE -7.50
Energy contribution -8.25
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.91
Structure conservation index 0.68
SVM decision value 0.07
SVM RNA-class probability 0.571031
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1152951 92 + 27905053
AAAUUCAAUUUCAAUUUCAAUUUCAAUUCCAAUUAUGCAGUCAAUCAAUUUGUAUUGCACAUUAAGUUCACUCGCCAAAAACGCAAACAAAA
...................................(((((((((.....))).))))))..............((.......))........ (  -7.40)
>DroSec_CAF1 88499 86 + 1
AAAUUCAAUUUCA------AUUUCAAUUCCAAUUAUGCAGUCAAUCAAUUUGUAUUGCACAUAAAGUUAGCUCGCCAAAAAGGCAAACAAAA
.............------................(((((((((.....))).))))))..............(((.....)))........ ( -11.60)
>DroSim_CAF1 84345 86 + 1
AAAUUCAAUUUCA------AUUUCAAUUCCAAUUAUGCAGUCAAUCAAUUUGUAUUGCACAUAAAGUUCGCUCGCCAAAAAGGCAAACAAAA
.............------................(((((((((.....))).))))))..............(((.....)))........ ( -11.60)
>DroEre_CAF1 86898 80 + 1
AAAUUCAAUUU------------CAAUUCCAAUUAUGCAGUCAAUCAAUUUGUUUUGCACAUAAAGUUUGCGCGCCAAAAACGCAAACAAAA
...........------------............(((((.(((.....)))..)))))......(((((((.........))))))).... ( -13.50)
>consensus
AAAUUCAAUUUCA______AUUUCAAUUCCAAUUAUGCAGUCAAUCAAUUUGUAUUGCACAUAAAGUUCGCUCGCCAAAAACGCAAACAAAA
...................................(((((((((.....))).))))))..............(((.....)))........ ( -7.50 =  -8.25 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:54 2006