Locus 3029

Sequence ID 3R_DroMel_CAF1
Location 8,079,175 – 8,079,295
Length 120
Max. P 0.732424
window4873

overview

Window 3

Location 8,079,175 – 8,079,295
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.11
Mean single sequence MFE -32.65
Consensus MFE -28.89
Energy contribution -28.76
Covariance contribution -0.13
Combinations/Pair 1.07
Mean z-score -1.84
Structure conservation index 0.88
SVM decision value 0.43
SVM RNA-class probability 0.732424
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8079175 120 + 27905053
AGAUACUCAAAUUGGGAAGUGCCCGAAAUGGUUUCAUUGACAACUGUCACCGCUCCGGACGCAAGCAUUCAGACUGACGUUUCUAUAUUUGGAAUCAUUUCGGUAACUUGAAAUUUCCCA
............((((((((..((((((((((((((.((((....)))).......(((((((..(.....)..)).))))).......))))))))))))))..))).......))))) ( -32.51)
>DroSec_CAF1 4079 120 + 1
AGAUACUCAAAUUGGGAAGUGCCCGAAAUGGUUUCAUUGACAACUGUCACCGCUCCGGACGCAAGUAUUCAGACUGACGUUUCUAUAUUUGGAAUCAUUUCGGUGACUCGAAAUUUCCCA
............((((((((.(((((((((((((((..((.(((.(((((((...)))((....))........)))))))))......)))))))))))))).).......)))))))) ( -35.00)
>DroSim_CAF1 2527 120 + 1
AGAUACUCAAAUUGGGAAGUGCCCGAAAUGGUUUCAUUGACAACUGUCACCGCUCCGGACGCAAGUAUUCAGACUGACGUUUCUAUAUUUGGAAUCAUUUCGGUGACUCGAAAUUUCUCA
............((((((((.(((((((((((((((..((.(((.(((((((...)))((....))........)))))))))......)))))))))))))).).......)))))))) ( -32.00)
>DroEre_CAF1 2590 120 + 1
AGAUACUCAAAUUGGGAAGUGCCCGAAAUGGUUUCAUUGACAACUGUCACUGCUGCGGACGCAAACAUUCAGACUGACAUUUCUAUAUUUGGAAUCAUUGCGGUGACUCGAAAUUUCCCA
............((((((((...(((....(((.....)))....(((((((((((....)))...........(((...(((((....))))))))..)))))))))))..)))))))) ( -31.10)
>consensus
AGAUACUCAAAUUGGGAAGUGCCCGAAAUGGUUUCAUUGACAACUGUCACCGCUCCGGACGCAAGCAUUCAGACUGACGUUUCUAUAUUUGGAAUCAUUUCGGUGACUCGAAAUUUCCCA
............((((((((..((((((((((((((.((((....))))(((...)))...............................))))))))))))))..))).......))))) (-28.89 = -28.76 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:50:34 2006